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Bug 933235 - sci-chemistry/pymol-3.0.0 fails to compile: ReadPARM7.h:62:16: error: type struct parm violates the C++ One Definition Rule [-Werror=odr]
Summary: sci-chemistry/pymol-3.0.0 fails to compile: ReadPARM7.h:62:16: error: type st...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Chemistry-Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: lto
  Show dependency tree
 
Reported: 2024-05-31 06:47 UTC by Agostino Sarubbo
Modified: 2024-09-05 04:08 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,465.97 KB, text/plain)
2024-05-31 06:47 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2024-05-31 06:47:32 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-chemistry/pymol-3.0.0 fails to compile.
Discovered on: amd64 (internal ref: lto_tinderbox)
System: LTO-SYSTEM (https://wiki.gentoo.org/wiki/Project:Tinderbox/Common_Issues_Helper#LTO)

Info about the issue:
https://wiki.gentoo.org/wiki/Project:Tinderbox/Common_Issues_Helper#CF0014
Comment 1 Agostino Sarubbo gentoo-dev 2024-05-31 06:47:33 UTC
Created attachment 894699 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2024-05-31 06:47:35 UTC
Error(s) that match a know pattern in addition to what has been reported in the summary:


fatal: not a git repository (or any parent up to mount point /var/tmp)
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:62:16: error: type ‘struct parm’ violates the C++ One Definition Rule [-Werror=odr]
Comment 3 Larry the Git Cow gentoo-dev 2024-09-05 04:08:36 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=05e449791a34defa3ab40141bf4b122e00f2f174

commit 05e449791a34defa3ab40141bf4b122e00f2f174
Author:     Eli Schwartz <eschwartz@gentoo.org>
AuthorDate: 2024-09-04 21:42:58 +0000
Commit:     Eli Schwartz <eschwartz@gentoo.org>
CommitDate: 2024-09-05 04:07:45 +0000

    sci-chemistry/pymol: mark as LTO-unsafe
    
    Closes: https://bugs.gentoo.org/933235
    Signed-off-by: Eli Schwartz <eschwartz@gentoo.org>

 sci-chemistry/pymol/pymol-3.0.0.ebuild | 5 +++++
 1 file changed, 5 insertions(+)