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Bug 932237 - sci-chemistry/autodock_vina-1.2.5 - [ncurses-6.5] ../.../split.cpp: fatal error: .../convenience.hpp: No such file or directory
Summary: sci-chemistry/autodock_vina-1.2.5 - [ncurses-6.5] ../.../split.cpp: fatal err...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Chemistry-Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: boost-1.85
  Show dependency tree
 
Reported: 2024-05-19 21:07 UTC by Toralf Förster
Modified: 2024-05-20 06:48 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,22.35 KB, text/plain)
2024-05-19 21:07 UTC, Toralf Förster
Details
emerge-history.txt.xz (emerge-history.txt.xz,128.66 KB, application/x-xz)
2024-05-19 21:07 UTC, Toralf Förster
Details
environment (environment,80.45 KB, text/plain)
2024-05-19 21:07 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,1.20 KB, application/x-xz)
2024-05-19 21:07 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,61.91 KB, application/x-xz)
2024-05-19 21:07 UTC, Toralf Förster
Details
qlist-info.txt.xz (qlist-info.txt.xz,125.13 KB, application/x-xz)
2024-05-19 21:07 UTC, Toralf Förster
Details
sci-chemistry:autodock_vina-1.2.5:20240519-201956.log (sci-chemistry:autodock_vina-1.2.5:20240519-201956.log,3.80 KB, text/plain)
2024-05-19 21:07 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2024-05-19 21:07:34 UTC
too long lines were shrinked:

fatal: not a git repository (or any parent up to mount point /var/tmp)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
x86_64-pc-linux-gnu-g++ -pthread -ansi -Wno-long-long -DNDEBUG -I /usr//include -O2 -pipe -march=native -fno-diagnostics-color -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14 -I ../../../src/lib -o split.o -c ../../../src/split/split.cpp 
x86_64-pc-linux-gnu-g++ -pthread -ansi -Wno-long-long -DNDEBUG -I /usr//include -O2 -pipe -march=native -fno-diagnostics-color -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14 -o szv_grid.o -c ../../../src/lib/szv_grid.cpp 
x86_64-pc-linux-gnu-g++ -pthread -ansi -Wno-long-long -DNDEBUG -I /usr//include -O2 -pipe -march=native -fno-diagnostics-color -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14 -o conf_independent.o -c ../../../src/lib/conf_independent.cpp 
x86_64-pc-linux-gnu-g++ -pthread -ansi -Wno-long-long -DNDEBUG -I /usr//include -O2 -pipe -march=native -fno-diagnostics-color -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14 -I ../../../src/lib -o main.o -c ../../../src/main/main.cpp 
../../../src/split/split.cpp:33:10: fatal error: boost/filesystem/convenience.hpp: No such file or directory
   33 | #include <boost/filesystem/convenience.hpp> // filesystem::basename
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_desktop_plasma-20240507-035004

  UNMASKED:
    >=sys-libs/ncurses-6.5
Issues involving opaque types / incomplete typedefs should block bug 930805

  The attached etc.portage.tar.xz has all details.
  -------------------------------------------------------------------

GNUMAKEFLAGS="$GNUMAKEFLAGS --shuffle"
gcc-config -l:
 [1] x86_64-pc-linux-gnu-14 *
clang/llvm (if any):
clang version 18.1.5
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/18/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/18
18.1.5
Python 3.11.9
Available Ruby profiles:
  [1]   ruby31 (with Rubygems)
  [2]   ruby32 (with Rubygems)
  [3]   ruby33 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.77.1 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 11.0.23_p9 [openjdk-bin-11]
2)	Eclipse Temurin JDK 17.0.11_p9 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.3_p9 [openjdk-bin-21]
4)	Eclipse Temurin JDK 8.412_p08 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11 
  [3]   openjdk-bin-17 
  [4]   openjdk-bin-21  system-vm

php cli (if any):
go version go1.22.3 linux/amd64

  HEAD of ::gentoo
commit 8d6a420530f405ac3521db2a02228a347f6c89b5
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Sun May 19 19:48:57 2024 +0000

    2024-05-19 19:48:56 UTC

emerge -qpvO sci-chemistry/autodock_vina
Comment 1 Toralf Förster gentoo-dev 2024-05-19 21:07:35 UTC
Created attachment 893424 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2024-05-19 21:07:36 UTC
Created attachment 893425 [details]
emerge-history.txt.xz
Comment 3 Toralf Förster gentoo-dev 2024-05-19 21:07:37 UTC
Created attachment 893426 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2024-05-19 21:07:38 UTC
Created attachment 893427 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2024-05-19 21:07:39 UTC
Created attachment 893428 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2024-05-19 21:07:41 UTC
Created attachment 893429 [details]
qlist-info.txt.xz
Comment 7 Toralf Förster gentoo-dev 2024-05-19 21:07:41 UTC
Created attachment 893430 [details]
sci-chemistry:autodock_vina-1.2.5:20240519-201956.log