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Bug 932153 - dev-python/pycairo: ImportError: /.../_cairo.cpython-311-x86_64-linux-gnu.so: undefined symbol: cairo_xlib_surface_get_width
Summary: dev-python/pycairo: ImportError: /.../_cairo.cpython-311-x86_64-linux-gnu.so:...
Status: UNCONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Python Gentoo Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2024-05-18 12:23 UTC by Martin Dummer
Modified: 2024-06-01 09:14 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,16.12 KB, text/plain)
2024-05-19 15:25 UTC, Martin Dummer
Details

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Description Martin Dummer 2024-05-18 12:23:27 UTC
emerging sys-apps/fwupd-1.9.18 USE="amt archive gnutls gusb nvme sqlite systemd uefi" failes in configure phase with the message


plugins/uefi-capsule/meson.build:129:4: ERROR: Problem encountered: Error: missing dependency python cairo (python3-cairo)

removing the USE="uefi" does emerge properly. 

dev-python/pycairo-1.26.0 is installed
Comment 1 Martin Dummer 2024-05-18 12:24:08 UTC
# emerge --info
Portage 3.0.63 (python 3.11.9-final-0, default/linux/amd64/23.0/systemd, gcc-13, glibc-2.38-r13, 6.6.30-gentoo-dist x86_64)
=================================================================
System uname: Linux-6.6.30-gentoo-dist-x86_64-Intel-R-_Core-TM-_i3-8100_CPU_@_3.60GHz-with-glibc2.38
KiB Mem:     3744868 total,   2046032 free
KiB Swap:    8388604 total,   8388348 free
Timestamp of repository gentoo: Fri, 17 May 2024 17:00:00 +0000
Head commit of repository gentoo: 6755a6f4f76c34027d1c0654e7ced0629194b437
Head commit of repository md-private: bfbd288f779aa65ebfb462a03ae847f1665bda5c

sh bash 5.1_p16-r6
ld GNU ld (Gentoo 2.42 p3) 2.42.0
app-misc/pax-utils:        1.3.7::gentoo
app-shells/bash:           5.1_p16-r6::gentoo
dev-build/autoconf:        2.71-r7::gentoo
dev-build/automake:        1.16.5-r2::gentoo
dev-build/cmake:           3.28.3::gentoo
dev-build/libtool:         2.4.7-r4::gentoo
dev-build/make:            4.4.1-r1::gentoo
dev-build/meson:           1.4.0-r1::gentoo
dev-lang/perl:             5.38.2-r3::gentoo
dev-lang/python:           3.11.9::gentoo, 3.12.3::gentoo
sys-apps/baselayout:       2.15::gentoo
sys-apps/sandbox:          2.38::gentoo
sys-apps/systemd:          255.4::gentoo
sys-devel/binutils:        2.42-r1::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/gcc:             13.2.1_p20240210::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-kernel/linux-headers:  6.6-r1::gentoo (virtual/os-headers)
sys-libs/glibc:            2.38-r13::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: False
    sync-rsync-verify-max-age: 3
    sync-rsync-extra-opts: 
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-jobs: 1

md-private
    location: /var/db/repos/md-private
    sync-type: git
    sync-uri: git://md11.it.cx/md-gentoo-overlay.git
    masters: gentoo
    volatile: False

Binary Repositories:

gentoobinhost
    priority: 1
    sync-uri: https://distfiles.gentoo.org/releases/amd64/binpackages/23.0/x86-64

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE linux-fw-redistributable intel-ucode"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d"
CXXFLAGS="-O2 -pipe"
DISTDIR="/var/cache/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance binpkg-request-signature buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles getbinpkg ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="https://ftp.spline.inf.fu-berlin.de/mirrors/gentoo/"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs"
LEX="flex"
MAKEOPTS="-j4 -l4"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="acl amd64 bzip2 cet crypt gdbm iconv ipv6 libtirpc multilib ncurses nls openmp pam pcre readline seccomp ssl systemd test-rust udev unicode xattr zlib" ABI_X86="64" ADA_TARGET="gcc_12" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby31" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 2 Mike Gilbert gentoo-dev 2024-05-18 16:43:49 UTC
Full build log please.
Comment 3 Martin Dummer 2024-05-19 15:25:34 UTC
Created attachment 893378 [details]
build.log
Comment 4 robertgzr 2024-05-22 15:53:47 UTC
encountered this as well. this is the error when trying to import cairo:

# python
Python 3.11.9 (main, Apr 29 2024, 06:16:04) [Clang 17.0.6 ] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import cairo
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/lib/python3.11/site-packages/cairo/__init__.py", line 1, in <module>
    from ._cairo import *  # noqa: F401,F403
    ^^^^^^^^^^^^^^^^^^^^^
ImportError: /usr/lib/python3.11/site-packages/cairo/_cairo.cpython-311-x86_64-linux-gnu.so: undefined symbol: cairo_xlib_surface_get_width

fixed by re-emerging pycairo
Comment 5 Marek Szuba (RETIRED) archtester gentoo-dev 2024-06-01 00:02:39 UTC
Looks like a problem with dev-python/pycairo, then.
Comment 6 Martin Dummer 2024-06-01 09:14:43 UTC
(In reply to robertgzr from comment #4)
> encountered this as well. this is the error when trying to import cairo:
>
...
> 
> fixed by re-emerging pycairo

I have investigated this a little more.
Before I filed this bug, I also tried to re-emerge pycairo.
After your post here, I tried again. No success, no change of the behaviour.

Then I noticed that I use binary packages from gentoo - following the binary guide.
So I tried another re-emerge of pycairo, but without --getbinpkg - after that I can emerge sys-apps/fwupd-1.9.18 USE="amt archive gnutls gusb nvme sqlite systemd uefi" without error.

My assumption is: there is something wrong with the pycairo binpkg.