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Bug 927976 - sci-biology/emboss-6.6.0-r2 - file collision with dev-texlive/texlive-latexextra-2023_p69752-r2
Summary: sci-biology/emboss-6.6.0-r2 - file collision with dev-texlive/texlive-latexex...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2024-03-27 17:27 UTC by Toralf Förster
Modified: 2024-03-30 19:36 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,18.92 KB, text/plain)
2024-03-27 17:27 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,45.81 KB, text/plain)
2024-03-27 17:27 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,1.17 KB, application/x-xz)
2024-03-27 17:27 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,21.19 KB, application/x-xz)
2024-03-27 17:27 UTC, Toralf Förster
Details
logs.tar.xz (logs.tar.xz,48.01 KB, application/x-xz)
2024-03-27 17:27 UTC, Toralf Förster
Details
qlist-info.txt (qlist-info.txt,94.56 KB, text/plain)
2024-03-27 17:27 UTC, Toralf Förster
Details
sci-biology:emboss-6.6.0-r2:20240327-095328.log.xz (sci-biology:emboss-6.6.0-r2:20240327-095328.log.xz,35.59 KB, application/x-xz)
2024-03-27 17:27 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2024-03-27 17:27:22 UTC
 * Press Ctrl-C to Stop
 * 
 * dev-texlive/texlive-latexextra-2023_p69752-r2:0::gentoo
 * 	/usr/bin/wordcount
 * 
 * Package 'sci-biology/emboss-6.6.0-r2' NOT merged due to file

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_desktop_gnome-20240326-012242

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
clang version 18.1.2
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/18/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/18
18.1.2
Python 3.11.8
Available Ruby profiles:
  [1]   ruby31 (with Rubygems)
  [2]   ruby33 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.76.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 21.0.2_p13 [openjdk-bin-21]
*)	Eclipse Temurin JDK 8.402_p06 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm
  [2]   openjdk-bin-21 

php cli (if any):

  HEAD of ::gentoo
commit eaa8baf96624ac5e4d6b9b78f884545d78664d4f
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Wed Mar 27 04:19:03 2024 +0000

    2024-03-27 04:19:02 UTC

emerge -qpvO sci-biology/emboss
[ebuild  N    ] sci-biology/emboss-6.6.0-r2  USE="X pdf png -minimal -mysql -postgres"
Comment 1 Toralf Förster gentoo-dev 2024-03-27 17:27:23 UTC
Created attachment 888806 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2024-03-27 17:27:24 UTC
Created attachment 888807 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2024-03-27 17:27:25 UTC
Created attachment 888808 [details]
etc.clang.tar.xz
Comment 4 Toralf Förster gentoo-dev 2024-03-27 17:27:26 UTC
Created attachment 888809 [details]
etc.portage.tar.xz
Comment 5 Toralf Förster gentoo-dev 2024-03-27 17:27:27 UTC
Created attachment 888810 [details]
logs.tar.xz
Comment 6 Toralf Förster gentoo-dev 2024-03-27 17:27:28 UTC
Created attachment 888811 [details]
qlist-info.txt
Comment 7 Toralf Förster gentoo-dev 2024-03-27 17:27:29 UTC
Created attachment 888812 [details]
sci-biology:emboss-6.6.0-r2:20240327-095328.log.xz
Comment 8 Larry the Git Cow gentoo-dev 2024-03-30 19:36:51 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=92cb387a0aa19b2cf594e25dcfa91a60f85c57e9

commit 92cb387a0aa19b2cf594e25dcfa91a60f85c57e9
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2024-03-30 19:36:42 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2024-03-30 19:36:42 +0000

    sci-biology/emboss: avoid file collision with dev-texlive/texlive-latexextra
    
    Closes: https://bugs.gentoo.org/927976
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/emboss/{emboss-6.6.0-r2.ebuild => emboss-6.6.0-r3.ebuild} | 3 +++
 1 file changed, 3 insertions(+)