927868 – sci-biology/gmap-2020.10.27 fails to compile: genome128_hr.c:3782:12: error: implicit declaration of function _mm256_extract_epi64 [-Wimplicit-function-declaration]

Bug 927868 - sci-biology/gmap-2020.10.27 fails to compile: genome128_hr.c:3782:12: error: implicit declaration of function _mm256_extract_epi64 [-Wimplicit-function-declaration]

Summary: sci-biology/gmap-2020.10.27 fails to compile: genome128_hr.c:3782:12: error: ...

Status:	CONFIRMED

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	Current packages (show other bugs)
Hardware:	All Linux

Importance:	Normal normal (vote)
Assignee:	Gentoo Science Biology related packages

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Keywords:

Depends on:
Blocks:	c99-porting
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Reported:	2024-03-26 08:32 UTC by Agostino Sarubbo
Modified:	2024-03-26 08:32 UTC (History)
CC List:	0 users

See Also:
Package list:
Runtime testing required:	---

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build.log (build.log,869.71 KB, text/plain) 2024-03-26 08:32 UTC, Agostino Sarubbo	Details
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Description Agostino Sarubbo gentoo-dev

2024-03-26 08:32:10 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/gmap-2020.10.27 fails to compile.
Discovered on: x86 (internal ref: tinderbox_x86)
System: GCC-14-SYSTEM (https://wiki.gentoo.org/wiki/Project:Tinderbox/Common_Issues_Helper#GCC-14)

Info about the issue:
https://wiki.gentoo.org/wiki/Project:Tinderbox/Common_Issues_Helper#CF0002

Comment 1 Agostino Sarubbo gentoo-dev

2024-03-26 08:32:11 UTC

Created attachment 888632 [details]
build.log

build log and emerge --info

Comment 2 Agostino Sarubbo gentoo-dev

2024-03-26 08:32:13 UTC

Error(s) that match a know pattern in addition to what has been reported in the summary:


checking for MAP_FAILED in mmap... yes
genome128_hr.c:3782:12: error: implicit declaration of function ‘_mm256_extract_epi64’; did you mean ‘_mm256_extract_epi8’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]