* Package: sci-biology/gmap-2020.10.27:0 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_32 elibc_glibc kernel_linux x86 * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox @@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; This ebuild was merged at the following commit: https://github.com/gentoo-mirror/gentoo/commit/38f5892217cac1d5222af6f1aa4c260da18c5bff (Tue Mar 26 04:49:02 UTC 2024) @@@@@ END @@@@@ ################## # emerge --info: # ################## Portage 3.0.63 (python 3.12.2-final-0, default/linux/x86/17.0, gcc-14, glibc-2.39-r2, 6.1.66-gentoo-dist i686) ================================================================= System uname: Linux-6.1.66-gentoo-dist-i686-AMD_EPYC_7513_32-Core_Processor-with-glibc2.39 KiB Mem: 263452516 total, 43681976 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Tue, 26 Mar 2024 04:49:02 +0000 sh bash 5.2_p26 ld GNU ld (Gentoo 2.42 p3) 2.42.0 app-misc/pax-utils: 1.3.7::gentoo app-shells/bash: 5.2_p26::gentoo dev-build/autoconf: 2.72-r1::gentoo dev-build/automake: 1.16.5-r2::gentoo dev-build/cmake: 3.29.0::gentoo dev-build/libtool: 2.4.7-r3::gentoo dev-build/make: 4.4.1-r1::gentoo dev-build/meson: 1.4.0-r1::gentoo dev-lang/perl: 5.38.2-r2::gentoo dev-lang/python: 3.10.14::gentoo, 3.11.8_p1::gentoo, 3.12.2_p1::gentoo sys-apps/baselayout: 2.15::gentoo sys-apps/openrc: 0.53.1::gentoo sys-apps/sandbox: 2.38::gentoo sys-devel/binutils: 2.42-r1::gentoo sys-devel/binutils-config: 5.5::gentoo sys-devel/gcc: 14.0.1_pre20240324::gentoo sys-devel/gcc-config: 2.11::gentoo sys-kernel/linux-headers: 6.7::gentoo (virtual/os-headers) sys-libs/glibc: 2.39-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 volatile: True sync-rsync-extra-opts: sync-rsync-verify-metamanifest: yes sync-rsync-verify-jobs: 1 sync-rsync-verify-max-age: 3 Binary Repositories: gentoobinhost priority: 1 sync-uri: https://gentoo.osuosl.org/releases/x86/binpackages/17.0/i686 ACCEPT_KEYWORDS="x86 ~x86" ACCEPT_LICENSE="* gmap" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" DISTDIR="/var/tmp/portage/sci-biology/gmap-2020.10.27/distdir" EMERGE_DEFAULT_OPTS="--complete-graph y --with-bdeps=y -1 -k -b --backtrack=100" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" LEX="flex" MAKEOPTS="-j16" PKGDIR="/root/tbci/binpkg" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="acl bzip2 cli crypt debug dri elogind fortran gdbm iconv ipv6 jumbo-build libtirpc native-symlinks ncurses nls openmp pam pcre readline seccomp split-usr ssl test-rust unicode x86 xattr zlib" ABI_X86="32" ELIBC="glibc" KERNEL="linux" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS ############################## # emerge history (qlop -mv): # ############################## ####################################### # installed packages (qlist -ICvUSS): # ####################################### acct-group/audio-0-r3:0 acct-group/cdrom-0-r3:0 acct-group/dialout-0-r3:0 acct-group/disk-0-r3:0 acct-group/floppy-0-r1:0 acct-group/input-0-r3:0 acct-group/kmem-0-r3:0 acct-group/kvm-0-r3:0 acct-group/lp-0-r3:0 acct-group/man-0-r3:0 acct-group/messagebus-0-r3:0 acct-group/polkitd-0-r3:0 acct-group/portage-0-r2:0 acct-group/render-0-r3:0 acct-group/root-0-r2:0 acct-group/sgx-0-r2:0 acct-group/sshd-0-r3:0 acct-group/tape-0-r3:0 acct-group/tty-0-r3:0 acct-group/usb-0-r3:0 acct-group/video-0-r3:0 acct-user/man-1-r3:0 acct-user/messagebus-0-r3:0 acct-user/polkitd-0-r3:0 acct-user/portage-0-r3:0 acct-user/sshd-0-r3:0 app-admin/eselect-1.4.27-r1:0 -doc -emacs -vim-syntax app-admin/perl-cleaner-2.31:0 -pkgcore app-alternatives/awk-4:0 -busybox gawk -mawk -nawk split-usr app-alternatives/bc-0:0 -gh gnu app-alternatives/bzip2-1:0 -lbzip2 -pbzip2 reference split-usr app-alternatives/cpio-0:0 gnu -libarchive split-usr app-alternatives/gzip-1:0 -pigz reference split-usr app-alternatives/lex-0-r1:0 flex -reflex app-alternatives/ninja-1:0 reference -samurai app-alternatives/sh-0:0 bash -busybox -dash -ksh -lksh -mksh app-alternatives/tar-0:0 gnu -libarchive split-usr app-alternatives/yacc-1-r2:0 bison -byacc -reference app-arch/bzip2-1.0.8-r5:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 -abi_x86_64 -abi_x86_x32 -static -static-libs -verify-sig app-arch/cpio-2.15:0 nls app-arch/gzip-1.13:0 -pic -static -verify-sig app-arch/libarchive-3.7.2-r2:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 -abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 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dev-build/gtk-doc-am-1.33.2:0 dev-build/libtool-2.4.7-r3:2 -vanilla dev-build/make-4.4.1-r1:0 -doc -guile nls -static -test -verify-sig dev-build/meson-1.4.0-r1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test -verify-sig dev-build/meson-format-array-0:0 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 dev-build/ninja-1.11.1-r5:0 -doc -test dev-db/sqlite-3.45.2:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 -abi_x86_64 -abi_x86_x32 debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools dev-lang/duktape-2.7.0-r3:0/2.7.0 dev-lang/perl-5.38.2-r2:0/5.38 -berkdb debug -doc gdbm ithreads -minimal -quadmath dev-lang/python-3.12.2_p1:3.12 -bluetooth -build debug ensurepip -examples gdbm -libedit ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig dev-lang/python-3.11.8_p1:3.11 -bluetooth -build debug ensurepip -examples gdbm -libedit ncurses -pgo 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x11-misc/compose-tables-1.8.8:0 x11-misc/shared-mime-info-2.4-r1:0 -test x11-misc/xdg-utils-1.2.1-r1:0 -X -dbus -doc -gnome ############# # build.log # ############# >>> Unpacking source... >>> Unpacking gmap-gsnap-2020-10-27.tar.gz to /var/tmp/portage/sci-biology/gmap-2020.10.27/work >>> Source unpacked in /var/tmp/portage/sci-biology/gmap-2020.10.27/work >>> Preparing source in /var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27 ... * Applying gmap-2020.10.27-fno-common.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27 ... * econf: updating gmap-2020-10-27/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating gmap-2020-10-27/config/config.sub with /usr/share/gnuconfig/config.sub ./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/gmap-2020.10.27 --htmldir=/usr/share/doc/gmap-2020.10.27/html --libdir=/usr/lib checking package version... 2020-10-27 loading default site script ./config.site checking CFLAGS... -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking for non-Intel CPU... no checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i686-pc-linux-gnu-gcc accepts -g... yes checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for a BSD-compatible install... /usr/lib/portage/python3.12/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking dependency style of i686-pc-linux-gnu-gcc... none checking whether to enable maintainer-specific portions of Makefiles... no checking bindir... /usr/bin checking for a working version of perl... /usr/bin/perl checking for i686-pc-linux-gnu-gcc... (cached) i686-pc-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether i686-pc-linux-gnu-gcc accepts -g... (cached) yes checking for i686-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether i686-pc-linux-gnu-gcc and cc understand -c and -o together... yes checking for C compiler vendor... gnu checking for rint in -lm... yes checking whether to use MPI_File for input... not specified so enabled by default checking for pthreads feature... not specified so enabled by default checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... i686-pc-linux-gnu-gcc checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking for inline... inline checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for size_t... yes checking for off_t... yes checking for caddr_t... yes checking size of unsigned long... 4 checking size of unsigned long long... 8 checking size of off_t... 8 checking for _LARGEFILE_SOURCE value needed for large files... no checking whether alloca is enabled... not specified so disabled by default checking whether mmap is enabled... not specified so enabled by default checking for working mmap with MAP_FIXED... no checking for working mmap with MAP_VARIABLE... no checking for MAP_FILE in mmap... yes checking for MAP_VARIABLE in mmap... no checking for MAP_SHARED in mmap... yes checking for MAP_PRIVATE in mmap... yes checking for MAP_FAILED in mmap... yes checking for MADV_DONTNEED in madvise... yes checking for MADV_WILLNEED in madvise... yes checking for MADV_RANDOM in madvise... yes checking for MADV_SEQUENTIAL in madvise... yes checking for SHM_NORESERVE in shmget... yes checking for ceil... yes checking for floor... yes checking for index... yes checking for log... yes checking for madvise... yes checking for memcpy... yes checking for memmove... yes checking for memset... yes checking for munmap... yes checking for pow... yes checking for rint... yes checking for stat64... yes checking for strtoul... yes checking for sysconf... yes checking for sysctl... no checking for sigaction... yes checking for shmget... yes checking for shmctl... yes checking for shmat... yes checking for shmdt... yes checking for semget... yes checking for semctl... yes checking for semop... yes checking for struct stat64... no checking for pagesize via sysconf... yes checking for pagesize via sysctl... no checking whether fopen accepts "b" mode... yes checking whether fopen accepts "t" mode... yes checking whether C compiler accepts -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -mpopcnt... yes checking for __builtin_popcount... yes checking for __builtin_clz... yes checking for __builtin_ctz... yes checking for bsr instruction in assembly... no checking compiler is defective and requires an immediate in sse2 shift commands... no checking for _mm_extract_epi64... yes checking for _mm_popcnt_u64... yes checking for whether simd is enabled... not specified so enabled by default checking for sse2 support... yes checking for ssse3 support... yes checking for sse4.1 support... yes checking for sse4.2 support... yes checking for popcnt support... yes checking for bmi1 support... no checking for avx2 support... yes checking for bmi2 support... no checking for avx512 support... no checking for avx512bw and avx512vl support... no checking whether C compiler accepts -msse2... yes checking for emmintrin.h header file... yes checking whether C compiler accepts -msse2 -mssse3... yes checking for tmmintrin.h header file... yes checking whether C compiler accepts -msse2 -mssse3 -msse4.1... yes checking for smmintrin.h header file... yes checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2... yes checking for nmmintrin.h header file... yes checking for mm_popcnt run support... yes checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2... yes checking for immintrin.h header file... yes checking gmapdb... /usr/share checking MAX_STACK_READLENGTH... 300 checking for zlib support... enabled checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for gzopen in -lz... yes checking for gzeof in -lz... yes checking for gzgetc in -lz... yes checking for gzgets in -lz... yes checking for gzclose in -lz... yes checking if zlib package is complete... working checking for gzbuffer in -lz... yes checking for bzlib support... enabled checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for BZ2_bzReadOpen in -lbz2... yes checking for BZ2_bzRead in -lbz2... yes checking for BZ2_bzReadClose in -lbz2... yes checking if bzlib package is complete... working checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating util/Makefile config.status: creating util/gmap_process.pl config.status: creating util/gmap_build.pl config.status: creating util/gmap_cat.pl config.status: creating util/md_coords.pl config.status: creating util/fa_coords.pl config.status: creating util/psl_splicesites.pl config.status: creating util/psl_introns.pl config.status: creating util/psl_genes.pl config.status: creating util/ensembl_genes.pl config.status: creating util/gtf_splicesites.pl config.status: creating util/gtf_transcript_splicesites.pl config.status: creating util/gtf_introns.pl config.status: creating util/gtf_genes.pl config.status: creating util/gff3_splicesites.pl config.status: creating util/gff3_introns.pl config.status: creating util/gff3_genes.pl config.status: creating util/dbsnp_iit.pl config.status: creating util/gvf_iit.pl config.status: creating util/vcf_iit.pl config.status: creating tests/Makefile config.status: creating tests/align.test config.status: creating tests/coords1.test config.status: creating tests/setup1.test config.status: creating tests/iit.test config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: WARNING: You don't seem to have memory mapping. GMAP will work without this, but the program can run faster if memory mapping is available. If you wish to enable memory mapping, please specify the appropriate values for CC, PTHREAD_CFLAGS, and PTHREAD_LIBS in the config.site file and run configure again. Otherwise, you may proceed with the rest of the installation. checking standard compiler and flags to be used... i686-pc-linux-gnu-gcc -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 checking standard linker flags to be used... checking pthread compiler flags to be used... checking popcnt flags to be used... -mpopcnt checking compile level... avx2 checking AVX2 compiler flags to be used... -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27 ... make -j16 Making all in src make[1]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/src' make all-am make[2]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/src' i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DMAIN=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo './'`gmap_select.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo './'`gmapl_select.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-filestring.o `test -f 'filestring.c' || echo './'`filestring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-md5.o `test -f 'md5.c' || echo './'`md5.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-fopen.o `test -f 'fopen.c' || echo './'`fopen.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-sequence.o `test -f 'sequence.c' || echo './'`sequence.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-genome.o `test -f 'genome.c' || echo './'`genome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-chrom.o `test -f 'chrom.c' || echo './'`chrom.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-datadir.o `test -f 'datadir.c' || echo './'`datadir.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-parserange.o `test -f 'parserange.c' || echo './'`parserange.c iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo './'`get-genome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-md5.o `test -f 'md5.c' || echo './'`md5.c genome.c: In function ‘fill_buffer’: genome.c:10603:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10603 | read(this->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:464:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 464 | read(this->fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10845:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10845 | read(genomealt->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11014:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11014 | read(this->fd,gbuffer1,/*length*/1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11334:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11334 | read(this->fd,gbuffer,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-genome.o `test -f 'genome.c' || echo './'`genome.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c In file included from compress-write.c:21: compress-write.c: In function ‘Compress_cat’: littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ compress-write.c:877:5: note: in expansion of macro ‘FREAD_UINTS’ 877 | FREAD_UINTS(Buffer,3,fp); | ^~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-compress.o `test -f 'compress.c' || echo './'`compress.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c genome.c: In function ‘fill_buffer’: genome.c:10603:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10603 | read(this->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:464:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 464 | read(this->fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10845:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10845 | read(genomealt->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11014:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11014 | read(this->fd,gbuffer1,/*length*/1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11334:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11334 | read(this->fd,gbuffer,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c: In function ‘Indexdb_get_filenames_bitpack’: indexdb.c:928:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 928 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 929 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1935:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1935 | read(positions_fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-regiondb-write.o `test -f 'regiondb-write.c' || echo './'`regiondb-write.c regiondb.c: In function ‘Regiondb_get_filenames’: regiondb.c:1644:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 1644 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 1645 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int In file included from regiondb-write.c:19: regiondb-write.c: In function ‘Region_read’: littleendian.h:22:31: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 22 | #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ regiondb-write.c:478:3: note: in expansion of macro ‘FREAD_USHORTS’ 478 | FREAD_USHORTS(buffer->offsets,offsets_size,fp); | ^~~~~~~~~~~~~ littleendian.h:22:31: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 22 | #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ regiondb-write.c:479:3: note: in expansion of macro ‘FREAD_USHORTS’ 479 | FREAD_USHORTS(buffer->positions,REGION_LENGTH,fp); | ^~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-table.o `test -f 'table.c' || echo './'`table.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo './'`tableuint8.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo './'`tableint.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo './'`gmapindex.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-list.o `test -f 'list.c' || echo './'`list.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-filestring.o `test -f 'filestring.c' || echo './'`filestring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c: In function ‘Indexdb_get_filenames_bitpack’: indexdb.c:928:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 928 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 929 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1935:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1935 | read(positions_fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c In file included from compress-write.c:21: compress-write.c: In function ‘Compress_cat’: littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ compress-write.c:877:5: note: in expansion of macro ‘FREAD_UINTS’ 877 | FREAD_UINTS(Buffer,3,fp); | ^~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-fopen.o `test -f 'fopen.c' || echo './'`fopen.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-datadir.o `test -f 'datadir.c' || echo './'`datadir.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-indexdb-cat.o `test -f 'indexdb-cat.c' || echo './'`indexdb-cat.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-interval.o `test -f 'interval.c' || echo './'`interval.c bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo './'`iit-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-tableint.o `test -f 'tableint.c' || echo './'`tableint.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-table.o `test -f 'table.c' || echo './'`table.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-chrom.o `test -f 'chrom.c' || echo './'`chrom.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo './'`iit_store.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-interval.o `test -f 'interval.c' || echo './'`interval.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-filestring.o `test -f 'filestring.c' || echo './'`filestring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo './'`iit_get.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-except.o `test -f 'except.c' || echo './'`except.c iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-assert.o `test -f 'assert.c' || echo './'`assert.c iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo './'`intlist.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-access.o `test -f 'access.c' || echo './'`access.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo './'`filestring.c access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo './'`iit_dump.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap-gsnap_select.o `test -f 'gsnap_select.c' || echo './'`gsnap_select.c iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl-gsnapl_select.o `test -f 'gsnapl_select.c' || echo './'`gsnapl_select.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-compress.o `test -f 'compress.c' || echo './'`compress.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ In file included from compress-write.c:21: compress-write.c: In function ‘Compress_cat’: littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ compress-write.c:877:5: note: in expansion of macro ‘FREAD_UINTS’ 877 | FREAD_UINTS(Buffer,3,fp); | ^~~~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c indexdb.c: In function ‘Indexdb_get_filenames_bitpack’: indexdb.c:928:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 928 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 929 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1935:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1935 | read(positions_fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-md5.o `test -f 'md5.c' || echo './'`md5.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-genome.o `test -f 'genome.c' || echo './'`genome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo './'`snpindex.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c genome.c: In function ‘fill_buffer’: genome.c:10603:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10603 | read(this->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:464:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 464 | read(this->fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-access.o `test -f 'access.c' || echo './'`access.c genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10845:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10845 | read(genomealt->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11014:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11014 | read(this->fd,gbuffer1,/*length*/1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11334:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11334 | read(this->fd,gbuffer,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-compress.o `test -f 'compress.c' || echo './'`compress.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c In file included from compress-write.c:21: compress-write.c: In function ‘Compress_cat’: littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ compress-write.c:877:5: note: in expansion of macro ‘FREAD_UINTS’ 877 | FREAD_UINTS(Buffer,3,fp); | ^~~~~~~~~~~ In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c: In function ‘Indexdb_get_filenames_bitpack’: indexdb.c:928:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 928 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 929 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1935:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1935 | read(positions_fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-regiondb-write.o `test -f 'regiondb-write.c' || echo './'`regiondb-write.c In file included from regiondb-write.c:19: regiondb-write.c: In function ‘Region_read’: littleendian.h:22:31: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 22 | #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ regiondb-write.c:478:3: note: in expansion of macro ‘FREAD_USHORTS’ 478 | FREAD_USHORTS(buffer->offsets,offsets_size,fp); | ^~~~~~~~~~~~~ littleendian.h:22:31: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 22 | #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ regiondb-write.c:479:3: note: in expansion of macro ‘FREAD_USHORTS’ 479 | FREAD_USHORTS(buffer->positions,REGION_LENGTH,fp); | ^~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo './'`cmet.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-md5.o `test -f 'md5.c' || echo './'`md5.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-genome.o `test -f 'genome.c' || echo './'`genome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo './'`cmetindex.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c genome.c: In function ‘fill_buffer’: genome.c:10603:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10603 | read(this->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:464:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 464 | read(this->fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10845:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10845 | read(genomealt->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11014:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11014 | read(this->fd,gbuffer1,/*length*/1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11334:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11334 | read(this->fd,gbuffer,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-compress.o `test -f 'compress.c' || echo './'`compress.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ In file included from compress-write.c:21: compress-write.c: In function ‘Compress_cat’: littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ compress-write.c:877:5: note: in expansion of macro ‘FREAD_UINTS’ 877 | FREAD_UINTS(Buffer,3,fp); | ^~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c indexdb.c: In function ‘Indexdb_get_filenames_bitpack’: indexdb.c:928:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 928 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 929 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1935:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1935 | read(positions_fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-regiondb-write.o `test -f 'regiondb-write.c' || echo './'`regiondb-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-atoi.o `test -f 'atoi.c' || echo './'`atoi.c In file included from regiondb-write.c:19: regiondb-write.c: In function ‘Region_read’: littleendian.h:22:31: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 22 | #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ regiondb-write.c:478:3: note: in expansion of macro ‘FREAD_USHORTS’ 478 | FREAD_USHORTS(buffer->offsets,offsets_size,fp); | ^~~~~~~~~~~~~ littleendian.h:22:31: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 22 | #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ regiondb-write.c:479:3: note: in expansion of macro ‘FREAD_USHORTS’ 479 | FREAD_USHORTS(buffer->positions,REGION_LENGTH,fp); | ^~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-md5.o `test -f 'md5.c' || echo './'`md5.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-genome.o `test -f 'genome.c' || echo './'`genome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-atoiindex.o `test -f 'atoiindex.c' || echo './'`atoiindex.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c genome.c: In function ‘fill_buffer’: genome.c:10603:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10603 | read(this->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:464:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 464 | read(this->fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10845:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10845 | read(genomealt->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11014:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11014 | read(this->fd,gbuffer1,/*length*/1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11334:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11334 | read(this->fd,gbuffer,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-trindex.o `test -f 'trindex.c' || echo './'`trindex.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-intlist.o `test -f 'intlist.c' || echo './'`intlist.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-filestring.o `test -f 'filestring.c' || echo './'`filestring.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-samheader.o `test -f 'samheader.c' || echo './'`samheader.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-samread.o `test -f 'samread.c' || echo './'`samread.c samheader.c: In function ‘SAM_header_change_HD_tosorted’: samheader.c:196:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 196 | fread(buffer,sizeof(char),CHUNK,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samheader.c:201:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 201 | fread(buffer,sizeof(char),headerlen,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-datadir.o `test -f 'datadir.c' || echo './'`datadir.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-sam_sort.o `test -f 'sam_sort.c' || echo './'`sam_sort.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c sam_sort.c: In function ‘process_no_dedup’: sam_sort.c:1160:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1160 | fgets(line,linelen+1,fp_sam); /* Will read linelen characters with '\n' and then '\0' */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ sam_sort.c: In function ‘print_results’: sam_sort.c:1012:15: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1012 | fgets(line,linelen+1,fp_sam); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ sam_sort.c:1029:15: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1029 | fgets(line,linelen+1,fp_sam); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ sam_sort.c: In function ‘read_sam_files_for_hashseq’: sam_sort.c:1369:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1369 | fgets(line,linelen+1,fp_sam); /* Will read linelen characters with '\n' and then '\0' */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-md5.o `test -f 'md5.c' || echo './'`md5.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-sequence.o `test -f 'sequence.c' || echo './'`sequence.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c In file included from compress-write.c:21: compress-write.c: In function ‘Compress_cat’: littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ compress-write.c:877:5: note: in expansion of macro ‘FREAD_UINTS’ 877 | FREAD_UINTS(Buffer,3,fp); | ^~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c: In function ‘Indexdb_get_filenames_bitpack’: indexdb.c:928:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 928 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 929 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1935:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1935 | read(positions_fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-block.o `test -f 'block.c' || echo './'`block.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-chrom.o `test -f 'chrom.c' || echo './'`chrom.c genome.c: In function ‘fill_buffer’: genome.c:10603:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10603 | read(this->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:464:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 464 | read(this->fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10845:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10845 | read(genomealt->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11014:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11014 | read(this->fd,gbuffer1,/*length*/1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11334:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11334 | read(this->fd,gbuffer,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-gregion.o `test -f 'gregion.c' || echo './'`gregion.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-match.o `test -f 'match.c' || echo './'`match.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-stage1.o `test -f 'stage1.c' || echo './'`stage1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-diag.o `test -f 'diag.c' || echo './'`diag.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-cmet.o `test -f 'cmet.c' || echo './'`cmet.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-atoi.o `test -f 'atoi.c' || echo './'`atoi.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-pair.o `test -f 'pair.c' || echo './'`pair.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-stage2.o `test -f 'stage2.c' || echo './'`stage2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-smooth.o `test -f 'smooth.c' || echo './'`smooth.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-translation.o `test -f 'translation.c' || echo './'`translation.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-stage3.o `test -f 'stage3.c' || echo './'`stage3.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-request.o `test -f 'request.c' || echo './'`request.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-result.o `test -f 'result.c' || echo './'`result.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-output.o `test -f 'output.c' || echo './'`output.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c samheader.c: In function ‘SAM_header_change_HD_tosorted’: samheader.c:196:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 196 | fread(buffer,sizeof(char),CHUNK,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samheader.c:201:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 201 | fread(buffer,sizeof(char),headerlen,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-chimera.o `test -f 'chimera.c' || echo './'`chimera.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-gmap.o `test -f 'gmap.c' || echo './'`gmap.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-md5.o `test -f 'md5.c' || echo './'`md5.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-sequence.o `test -f 'sequence.c' || echo './'`sequence.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c In file included from compress-write.c:21: compress-write.c: In function ‘Compress_cat’: littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ compress-write.c:877:5: note: in expansion of macro ‘FREAD_UINTS’ 877 | FREAD_UINTS(Buffer,3,fp); | ^~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c: In function ‘Indexdb_get_filenames_bitpack’: indexdb.c:928:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 928 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 929 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int indexdb.c: In function ‘positions_read_multiple_large’: indexdb.c:1879:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1879 | read(positions_high_fd,buffer,1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ indexdb.c:1883:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1883 | read(positions_fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c genome.c: In function ‘fill_buffer’: genome.c:10603:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10603 | read(this->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:464:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 464 | read(this->fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10845:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10845 | read(genomealt->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11014:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11014 | read(this->fd,gbuffer1,/*length*/1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11334:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11334 | read(this->fd,gbuffer,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-block.o `test -f 'block.c' || echo './'`block.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-chrom.o `test -f 'chrom.c' || echo './'`chrom.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-gregion.o `test -f 'gregion.c' || echo './'`gregion.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-match.o `test -f 'match.c' || echo './'`match.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-stage1.o `test -f 'stage1.c' || echo './'`stage1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-diag.o `test -f 'diag.c' || echo './'`diag.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-cmet.o `test -f 'cmet.c' || echo './'`cmet.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-atoi.o `test -f 'atoi.c' || echo './'`atoi.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-pair.o `test -f 'pair.c' || echo './'`pair.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-stage2.o `test -f 'stage2.c' || echo './'`stage2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-smooth.o `test -f 'smooth.c' || echo './'`smooth.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-translation.o `test -f 'translation.c' || echo './'`translation.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-stage3.o `test -f 'stage3.c' || echo './'`stage3.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-request.o `test -f 'request.c' || echo './'`request.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-result.o `test -f 'result.c' || echo './'`result.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-output.o `test -f 'output.c' || echo './'`output.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c samheader.c: In function ‘SAM_header_change_HD_tosorted’: samheader.c:196:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 196 | fread(buffer,sizeof(char),CHUNK,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samheader.c:201:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 201 | fread(buffer,sizeof(char),headerlen,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-chimera.o `test -f 'chimera.c' || echo './'`chimera.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-gmap.o `test -f 'gmap.c' || echo './'`gmap.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c In file included from transcriptome.c:28: transcriptome.c: In function ‘Transcriptome_new’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ transcriptome.c:132:5: note: in expansion of macro ‘FREAD_INT’ 132 | FREAD_INT(&divint,fp); | ^~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c genome.c: In function ‘fill_buffer’: genome.c:10603:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10603 | read(this->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:464:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 464 | read(this->fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10845:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10845 | read(genomealt->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11014:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11014 | read(this->fd,gbuffer1,/*length*/1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11334:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11334 | read(this->fd,gbuffer,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ indexdb.c: In function ‘Indexdb_get_filenames_bitpack’: indexdb.c:928:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 928 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 929 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1935:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1935 | read(positions_fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c regiondb.c: In function ‘Regiondb_get_filenames’: regiondb.c:1644:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 1644 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 1645 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-mdprint.o `test -f 'mdprint.c' || echo './'`mdprint.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-cigar.o `test -f 'cigar.c' || echo './'`cigar.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-samprint.o `test -f 'samprint.c' || echo './'`samprint.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-mapq.o `test -f 'mapq.c' || echo './'`mapq.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-shortread.o `test -f 'shortread.c' || echo './'`shortread.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-substring.o `test -f 'substring.c' || echo './'`substring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-junction.o `test -f 'junction.c' || echo './'`junction.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-method.o `test -f 'method.c' || echo './'`method.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-ladder.o `test -f 'ladder.c' || echo './'`ladder.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-concordance.o `test -f 'concordance.c' || echo './'`concordance.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo './'`uintlistpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-listpool.o `test -f 'listpool.c' || echo './'`listpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-splice.o `test -f 'splice.c' || echo './'`splice.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-indel.o `test -f 'indel.c' || echo './'`indel.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-intersect.o `test -f 'intersect.c' || echo './'`intersect.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-terminal.o `test -f 'terminal.c' || echo './'`terminal.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-request.o `test -f 'request.c' || echo './'`request.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-output.o `test -f 'output.c' || echo './'`output.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c samheader.c: In function ‘SAM_header_change_HD_tosorted’: samheader.c:196:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 196 | fread(buffer,sizeof(char),CHUNK,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samheader.c:201:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 201 | fread(buffer,sizeof(char),headerlen,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c In file included from transcriptome.c:28: transcriptome.c: In function ‘Transcriptome_new’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ transcriptome.c:132:5: note: in expansion of macro ‘FREAD_INT’ 132 | FREAD_INT(&divint,fp); | ^~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo './'`merge-diagonals-heap.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-merge-uint8.o `test -f 'merge-uint8.c' || echo './'`merge-uint8.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo './'`merge-diagonals-simd-uint8.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c genome.c: In function ‘fill_buffer’: genome.c:10603:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10603 | read(this->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:464:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 464 | read(this->fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10845:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10845 | read(genomealt->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11014:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11014 | read(this->fd,gbuffer1,/*length*/1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11334:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11334 | read(this->fd,gbuffer,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c indexdb.c: In function ‘Indexdb_get_filenames_bitpack’: indexdb.c:928:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 928 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 929 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c indexdb.c: In function ‘positions_read_multiple_large’: indexdb.c:1879:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1879 | read(positions_high_fd,buffer,1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ indexdb.c:1883:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1883 | read(positions_fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ regiondb.c: In function ‘Regiondb_get_filenames’: regiondb.c:1644:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 1644 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 1645 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-mdprint.o `test -f 'mdprint.c' || echo './'`mdprint.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-cigar.o `test -f 'cigar.c' || echo './'`cigar.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-samprint.o `test -f 'samprint.c' || echo './'`samprint.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-mapq.o `test -f 'mapq.c' || echo './'`mapq.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-shortread.o `test -f 'shortread.c' || echo './'`shortread.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-substring.o `test -f 'substring.c' || echo './'`substring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-junction.o `test -f 'junction.c' || echo './'`junction.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-method.o `test -f 'method.c' || echo './'`method.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-ladder.o `test -f 'ladder.c' || echo './'`ladder.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-concordance.o `test -f 'concordance.c' || echo './'`concordance.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-uint8listpool.o `test -f 'uint8listpool.c' || echo './'`uint8listpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-listpool.o `test -f 'listpool.c' || echo './'`listpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-splice.o `test -f 'splice.c' || echo './'`splice.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-indel.o `test -f 'indel.c' || echo './'`indel.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-intersect.o `test -f 'intersect.c' || echo './'`intersect.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-intersect-large.o `test -f 'intersect-large.c' || echo './'`intersect-large.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-terminal.o `test -f 'terminal.c' || echo './'`terminal.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-request.o `test -f 'request.c' || echo './'`request.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-output.o `test -f 'output.c' || echo './'`output.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c samheader.c: In function ‘SAM_header_change_HD_tosorted’: samheader.c:196:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 196 | fread(buffer,sizeof(char),CHUNK,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samheader.c:201:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 201 | fread(buffer,sizeof(char),headerlen,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-interval.o `test -f 'interval.c' || echo './'`interval.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-filestring.o `test -f 'filestring.c' || echo './'`filestring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-md5.o `test -f 'md5.c' || echo './'`md5.c access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-fopen.o `test -f 'fopen.c' || echo './'`fopen.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-sequence.o `test -f 'sequence.c' || echo './'`sequence.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-reader.o `test -f 'reader.c' || echo './'`reader.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-compress.o `test -f 'compress.c' || echo './'`compress.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-genome.o `test -f 'genome.c' || echo './'`genome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-popcount.o `test -f 'popcount.c' || echo './'`popcount.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c In file included from compress-write.c:21: compress-write.c: In function ‘Compress_cat’: littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ compress-write.c:877:5: note: in expansion of macro ‘FREAD_UINTS’ 877 | FREAD_UINTS(Buffer,3,fp); | ^~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-oligo.o `test -f 'oligo.c' || echo './'`oligo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-block.o `test -f 'block.c' || echo './'`block.c genome.c: In function ‘fill_buffer’: genome.c:10603:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10603 | read(this->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:464:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 464 | read(this->fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10845:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10845 | read(genomealt->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11014:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11014 | read(this->fd,gbuffer1,/*length*/1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11334:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11334 | read(this->fd,gbuffer,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-chrom.o `test -f 'chrom.c' || echo './'`chrom.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-gregion.o `test -f 'gregion.c' || echo './'`gregion.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-match.o `test -f 'match.c' || echo './'`match.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-stage1.o `test -f 'stage1.c' || echo './'`stage1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-diag.o `test -f 'diag.c' || echo './'`diag.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-cmet.o `test -f 'cmet.c' || echo './'`cmet.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-atoi.o `test -f 'atoi.c' || echo './'`atoi.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c indexdb.c: In function ‘Indexdb_get_filenames_bitpack’: indexdb.c:928:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 928 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 929 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1935:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1935 | read(positions_fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-transcript.o `test -f 'transcript.c' || echo './'`transcript.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-intron.o `test -f 'intron.c' || echo './'`intron.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-maxent.o `test -f 'maxent.c' || echo './'`maxent.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-pair.o `test -f 'pair.c' || echo './'`pair.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-stage2.o `test -f 'stage2.c' || echo './'`stage2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-smooth.o `test -f 'smooth.c' || echo './'`smooth.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-translation.o `test -f 'translation.c' || echo './'`translation.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-stage3.o `test -f 'stage3.c' || echo './'`stage3.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-request.o `test -f 'request.c' || echo './'`request.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-result.o `test -f 'result.c' || echo './'`result.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-output.o `test -f 'output.c' || echo './'`output.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-samheader.o `test -f 'samheader.c' || echo './'`samheader.c samheader.c: In function ‘SAM_header_change_HD_tosorted’: samheader.c:196:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 196 | fread(buffer,sizeof(char),CHUNK,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samheader.c:201:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 201 | fread(buffer,sizeof(char),headerlen,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-chimera.o `test -f 'chimera.c' || echo './'`chimera.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-datadir.o `test -f 'datadir.c' || echo './'`datadir.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-gmap.o `test -f 'gmap.c' || echo './'`gmap.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-filestring.o `test -f 'filestring.c' || echo './'`filestring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-md5.o `test -f 'md5.c' || echo './'`md5.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-fopen.o `test -f 'fopen.c' || echo './'`fopen.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-sequence.o `test -f 'sequence.c' || echo './'`sequence.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-reader.o `test -f 'reader.c' || echo './'`reader.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-compress.o `test -f 'compress.c' || echo './'`compress.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-genome.o `test -f 'genome.c' || echo './'`genome.c In file included from compress-write.c:21: compress-write.c: In function ‘Compress_cat’: littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ compress-write.c:877:5: note: in expansion of macro ‘FREAD_UINTS’ 877 | FREAD_UINTS(Buffer,3,fp); | ^~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-popcount.o `test -f 'popcount.c' || echo './'`popcount.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-oligo.o `test -f 'oligo.c' || echo './'`oligo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-block.o `test -f 'block.c' || echo './'`block.c genome.c: In function ‘fill_buffer’: genome.c:10603:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10603 | read(this->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:464:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 464 | read(this->fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10845:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10845 | read(genomealt->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11014:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11014 | read(this->fd,gbuffer1,/*length*/1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11334:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11334 | read(this->fd,gbuffer,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-chrom.o `test -f 'chrom.c' || echo './'`chrom.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-gregion.o `test -f 'gregion.c' || echo './'`gregion.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-match.o `test -f 'match.c' || echo './'`match.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-stage1.o `test -f 'stage1.c' || echo './'`stage1.c indexdb.c: In function ‘Indexdb_get_filenames_bitpack’: indexdb.c:928:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 928 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 929 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int indexdb.c: In function ‘positions_read_multiple_large’: indexdb.c:1879:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1879 | read(positions_high_fd,buffer,1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-diag.o `test -f 'diag.c' || echo './'`diag.c indexdb.c:1883:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1883 | read(positions_fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-cmet.o `test -f 'cmet.c' || echo './'`cmet.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-atoi.o `test -f 'atoi.c' || echo './'`atoi.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-transcript.o `test -f 'transcript.c' || echo './'`transcript.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-intron.o `test -f 'intron.c' || echo './'`intron.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-maxent.o `test -f 'maxent.c' || echo './'`maxent.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-pair.o `test -f 'pair.c' || echo './'`pair.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-stage2.o `test -f 'stage2.c' || echo './'`stage2.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-smooth.o `test -f 'smooth.c' || echo './'`smooth.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-translation.o `test -f 'translation.c' || echo './'`translation.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-stage3.o `test -f 'stage3.c' || echo './'`stage3.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-request.o `test -f 'request.c' || echo './'`request.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-result.o `test -f 'result.c' || echo './'`result.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-output.o `test -f 'output.c' || echo './'`output.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-samheader.o `test -f 'samheader.c' || echo './'`samheader.c samheader.c: In function ‘SAM_header_change_HD_tosorted’: samheader.c:196:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 196 | fread(buffer,sizeof(char),CHUNK,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samheader.c:201:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 201 | fread(buffer,sizeof(char),headerlen,input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-chimera.o `test -f 'chimera.c' || echo './'`chimera.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-datadir.o `test -f 'datadir.c' || echo './'`datadir.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-parserange.o `test -f 'parserange.c' || echo './'`parserange.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-getline.o `test -f 'getline.c' || echo './'`getline.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-getopt.o `test -f 'getopt.c' || echo './'`getopt.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-gmap.o `test -f 'gmap.c' || echo './'`gmap.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-except.o `test -f 'except.c' || echo './'`except.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-assert.o `test -f 'assert.c' || echo './'`assert.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-mem.o `test -f 'mem.c' || echo './'`mem.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-intlist.o `test -f 'intlist.c' || echo './'`intlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-list.o `test -f 'list.c' || echo './'`list.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 14 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 27 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 45 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 60 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 66 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 16 | write(fd,buf,1); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 215 | write(fd,buf,4); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 299 | read(fd,buf,4); | ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 367 | write(fd,buf,8); | ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 484 | read(fd,buf,8); | ^~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-interval.o `test -f 'interval.c' || echo './'`interval.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-access.o `test -f 'access.c' || echo './'`access.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-filestring.o `test -f 'filestring.c' || echo './'`filestring.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c access.c: In function ‘Access_allocate_shared’: access.c:921:85: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 921 | attach not working on file %s, so using malloc instead on %lu bytes\n", | ~~^ | | | long unsigned int | %u 922 | n); | ~ access.c: In function ‘copy_memory_from_file’: access.c:536:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 536 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:541:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 541 | fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:547:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 547 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:552:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 552 | fread(p,sizeof(UINT2),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:558:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 558 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:563:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 563 | fread(p,sizeof(UINT4),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:569:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 569 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:574:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 574 | fread(p,sizeof(UINT8),filesize/eltsize - i,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:600:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 600 | fread(p,sizeof(unsigned char),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:602:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 602 | fread(p,sizeof(unsigned char),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:608:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 608 | fread(p,sizeof(UINT2),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:610:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 610 | fread(p,sizeof(UINT2),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:616:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 616 | fread(p,sizeof(UINT4),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:618:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 618 | fread(p,sizeof(UINT4),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:624:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 624 | fread(p,sizeof(UINT8),FREAD_BATCH,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:626:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 626 | fread(p,sizeof(UINT8),filesize/eltsize,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-reader.o `test -f 'reader.c' || echo './'`reader.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c In file included from iit-read-univ.c:12: iit-read-univ.c: In function ‘read_tree_univ’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1188:9: note: in expansion of macro ‘FREAD_UINT’ 1188 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1190:9: note: in expansion of macro ‘FREAD_INT’ 1190 | FREAD_INT(&(new->nodes[i].a),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1191:9: note: in expansion of macro ‘FREAD_INT’ 1191 | FREAD_INT(&(new->nodes[i].b),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1192:9: note: in expansion of macro ‘FREAD_INT’ 1192 | FREAD_INT(&(new->nodes[i].leftindex),fp); | ^~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1193:9: note: in expansion of macro ‘FREAD_INT’ 1193 | FREAD_INT(&(new->nodes[i].rightindex),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_intervals_univ’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1241:7: note: in expansion of macro ‘FREAD_UINT8’ 1241 | FREAD_UINT8(&(new->intervals[i].low),fp); | ^~~~~~~~~~~ littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1242:7: note: in expansion of macro ‘FREAD_UINT8’ 1242 | FREAD_UINT8(&(new->intervals[i].high),fp); | ^~~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1243:7: note: in expansion of macro ‘FREAD_INT’ 1243 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1252:7: note: in expansion of macro ‘FREAD_UINT’ 1252 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1254:7: note: in expansion of macro ‘FREAD_UINT’ 1254 | FREAD_UINT(&uint4,fp); | ^~~~~~~~~~ littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1256:7: note: in expansion of macro ‘FREAD_INT’ 1256 | FREAD_INT(&(new->intervals[i].type),fp); | ^~~~~~~~~ iit-read-univ.c: In function ‘read_words’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1316:3: note: in expansion of macro ‘FREAD_UINT’ 1316 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1509:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1509 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1513 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1517:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1517 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1521:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1521 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1525:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1525 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c: In function ‘read_words_debug’: littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1398:3: note: in expansion of macro ‘FREAD_UINT’ 1398 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-compress.o `test -f 'compress.c' || echo './'`compress.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-genome.o `test -f 'genome.c' || echo './'`genome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-popcount.o `test -f 'popcount.c' || echo './'`popcount.c In file included from iit-read.c:12: iit-read.c: In function ‘IIT_read_divint’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’ 2588 | FREAD_INT(&version,fp); | ^~~~~~~~~ iit-read.c: In function ‘IIT_read’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’ 3103 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_tree’: iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1760 | fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1761 | fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1762 | fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1763 | fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1764 | fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_intervals’: iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1889 | fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1890 | fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1892 | fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1896 | fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘read_words’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’ 2144 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’ 2150 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ iit-read.c: In function ‘read_annotations’: iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2482 | read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2486 | read(new->fd,new->values,new->value_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2491 | read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2497 | read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2502 | read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2513 | read(new->fd,new->labels,new->label_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2519 | read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2524 | read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 2535 | read(new->fd,new->annotations,new->annot_length*sizeof(char)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c: In function ‘IIT_debug’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:3516:5: note: in expansion of macro ‘FREAD_INT’ 3516 | FREAD_INT(&new->version,fp); | ^~~~~~~~~ iit-read.c: In function ‘read_words_debug’: littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’ 2288 | FREAD_UINT8(&length8,fp); | ^~~~~~~~~~~ littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’ 2293 | FREAD_UINT(&length,fp); | ^~~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c In file included from transcriptome.c:28: transcriptome.c: In function ‘Transcriptome_new’: littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ transcriptome.c:132:5: note: in expansion of macro ‘FREAD_INT’ 132 | FREAD_INT(&divint,fp); | ^~~~~~~~~ i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"i686-pc-linux-gnu\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c genome.c: In function ‘fill_buffer’: genome.c:10603:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10603 | read(this->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:464:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 464 | read(this->fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10845:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 10845 | read(genomealt->fd,gbuffer1,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11014:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11014 | read(this->fd,gbuffer1,/*length*/1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11334:7: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 11334 | read(this->fd,gbuffer,length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome128_hr.c: In function ‘count_leading_zeroes_256’: genome128_hr.c:3782:12: error: implicit declaration of function ‘_mm256_extract_epi64’; did you mean ‘_mm256_extract_epi8’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]] 3782 | if ((x = _mm256_extract_epi64(_diff,3)) != 0) { | ^~~~~~~~~~~~~~~~~~~~ | _mm256_extract_epi8 genome128_hr.c: In function ‘count_leading_zeroes_128’: genome128_hr.c:4060:12: error: implicit declaration of function ‘_mm_extract_epi64’; did you mean ‘_mm_extract_epi32’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]] 4060 | if ((x = _mm_extract_epi64(_diff,1)) != 0) { | ^~~~~~~~~~~~~~~~~ | _mm_extract_epi32 genome128_hr.c: In function ‘Genome_count_mismatches_substring_ref’: genome128_hr.c:4037:35: error: implicit declaration of function ‘_mm_popcnt_u64’; did you mean ‘_mm_popcnt_u32’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]] 4037 | #define popcount_ones_128(_diff) (_mm_popcnt_u64(_mm_extract_epi64(_diff,0)) + _mm_popcnt_u64(_mm_extract_epi64(_diff,1))) | ^~~~~~~~~~~~~~ genome128_hr.c:4726:12: note: in expansion of macro ‘popcount_ones_128’ 4726 | return popcount_ones_128(diff_128); | ^~~~~~~~~~~~~~~~~ make[2]: *** [Makefile:29267: gsnap_avx2-genome128_hr.o] Error 1 make[2]: *** Waiting for unfinished jobs.... genome128_consec.c: In function ‘count_leading_zeroes_256’: genome128_consec.c:2871:12: error: implicit declaration of function ‘_mm256_extract_epi64’; did you mean ‘_mm256_extract_epi8’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]] 2871 | if ((x = _mm256_extract_epi64(_diff,3)) != 0) { | ^~~~~~~~~~~~~~~~~~~~ | _mm256_extract_epi8 genome128_consec.c: In function ‘count_leading_zeroes_128’: genome128_consec.c:3109:12: error: implicit declaration of function ‘_mm_extract_epi64’; did you mean ‘_mm_extract_epi32’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]] 3109 | if ((x = _mm_extract_epi64(_diff,1)) != 0) { | ^~~~~~~~~~~~~~~~~ | _mm_extract_epi32 make[2]: *** [Makefile:29281: gsnap_avx2-genome128_consec.o] Error 1 indexdb.c: In function ‘Indexdb_get_filenames_bitpack’: indexdb.c:928:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 928 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 929 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1935:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wno-unused-result]] 1935 | read(positions_fd,buffer,4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ regiondb.c: In function ‘Regiondb_get_filenames’: regiondb.c:1644:92: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat]] 1644 | t parse part between %s and offsets in filename %s: found %ld characters, expecting %d\n", | ~~^ | | | long int | %d 1645 | x,filename,q-p,BASE_KMER_SAMPLING); | ~~~ | | | int make[2]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/src' make[1]: *** [Makefile:3693: all] Error 2 make[1]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/src' make: *** [Makefile:389: all-recursive] Error 1 * ERROR: sci-biology/gmap-2020.10.27::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-biology/gmap-2020.10.27::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/gmap-2020.10.27::gentoo'`. * The complete build log is located at '/var/log/emerge-log/build/sci-biology/gmap-2020.10.27:20240326-055946.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/gmap-2020.10.27/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/gmap-2020.10.27/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27' * S: '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27'