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Bug 921958 - dev-python/networkx-3.2.1: fails test_traveling_salesman.py::test_asadpour_tsp test
Summary: dev-python/networkx-3.2.1: fails test_traveling_salesman.py::test_asadpour_ts...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Python Gentoo Team
URL:
Whiteboard:
Keywords: TESTFAILURE
Depends on:
Blocks:
 
Reported: 2024-01-12 18:34 UTC by Sam James
Modified: 2024-02-20 10:27 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log.xz (build.log.xz,82.05 KB, application/x-xz)
2024-01-12 18:35 UTC, Sam James
Details

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Description Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-01-12 18:34:39 UTC
=========================== short test summary info ============================
SKIPPED [1] networkx/algorithms/tests/test_polynomials.py:7: could not import 'sympy': No module named 'sympy'
SKIPPED [1] networkx/drawing/tests/test_agraph.py:7: could not import 'pygraphviz': No module named 'pygraphviz'
SKIPPED [1] networkx/drawing/tests/test_pydot.py:11: could not import 'pydot': No module named 'pydot'
SKIPPED [1] networkx/algorithms/tree/tests/test_mst.py:492: need --runslow option to run
SKIPPED [1] networkx/algorithms/tree/tests/test_mst.py:618: need --runslow option to run
SKIPPED [1] networkx/classes/tests/test_backends.py:25: condition: not nx._dispatch._automatic_backends or nx._dispatch._automatic_backends[0] != 'nx-loopback'
SKIPPED [1] networkx/algorithms/approximation/tests/test_traveling_salesman.py:905: need --runslow option to run
SKIPPED [1] networkx/tests/test_all_random_functions.py:222: need --runslow option to run
SKIPPED [1] networkx/algorithms/connectivity/tests/test_kcomponents.py:94: need --runslow option to run
SKIPPED [1] networkx/algorithms/connectivity/tests/test_kcomponents.py:110: need --runslow option to run
SKIPPED [1] networkx/algorithms/connectivity/tests/test_kcomponents.py:117: need --runslow option to run
SKIPPED [1] networkx/algorithms/flow/tests/test_maxflow_large_graph.py:128: need --runslow option to run
SKIPPED [1] networkx/algorithms/connectivity/tests/test_kcutsets.py:136: need --runslow option to run
SKIPPED [1] networkx/algorithms/connectivity/tests/test_kcutsets.py:210: need --runslow option to run
SKIPPED [1] networkx/algorithms/flow/tests/test_gomory_hu.py:76: need --runslow option to run
FAILED networkx/algorithms/approximation/tests/test_traveling_salesman.py::test_asadpour_tsp - assert [3, 2, 1, 0, 5, 4, ...] in [[1, 4, 5, 0, 2, 3, ...], [3, 2, 0, 1, 4,...
=========== 1 failed, 5228 passed, 15 skipped, 21 warnings in 44.52s ===========
 * pytest failed with python3.11
 * ERROR: dev-python/networkx-3.2.1::gentoo failed (test phase):
 *   (no error message)

----

# emerge --info
Portage 3.0.59 (python 3.11.7-final-0, default/linux/x86/17.0/systemd, gcc-13, glibc-2.37-r7, 6.6.11 i686)
=================================================================
System uname: Linux-6.6.11-i686-AMD_Ryzen_9_3950X_16-Core_Processor-with-glibc2.37
KiB Mem:    65758036 total,   7914304 free
KiB Swap:   16662520 total,    305400 free
Timestamp of repository gentoo: Fri, 12 Jan 2024 18:05:10 +0000
sh bash 5.1_p16-r6
ld GNU ld (Gentoo 2.40 p5) 2.40.0
app-misc/pax-utils:        1.3.7::gentoo
app-shells/bash:           5.1_p16-r6::gentoo
dev-lang/perl:             5.38.2-r1::gentoo
dev-lang/python:           3.11.7::gentoo, 3.12.1::gentoo
dev-lang/rust-bin:         1.74.1::gentoo
dev-util/cmake:            3.27.9::gentoo
dev-util/meson:            1.3.0-r2::gentoo
sys-apps/baselayout:       2.14-r1::gentoo
sys-apps/sandbox:          2.37::gentoo
sys-apps/systemd:          254.7::gentoo
sys-devel/autoconf:        2.71-r6::gentoo
sys-devel/automake:        1.16.5-r1::gentoo
sys-devel/binutils:        2.40-r5::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/gcc:             13.2.1_p20230826::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-devel/libtool:         2.4.7-r1::gentoo
sys-devel/llvm:            16.0.6::gentoo
sys-devel/make:            4.4.1-r1::gentoo
sys-kernel/linux-headers:  6.1::gentoo (virtual/os-headers)
sys-libs/glibc:            2.37-r7::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: False
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts: 
    sync-rsync-verify-max-age: 3
    sync-rsync-verify-jobs: 1

ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="*"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=i686 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -march=i686 -pipe"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--keep-going --complete-graph --usepkg=n"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -march=i686 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live clean-logs config-protect-if-modified distlocks fixlafiles ipc-sandbox multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms split-elog split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=i686 -pipe"
GENTOO_MIRRORS="https://mirrors.gethosted.online/gentoo/ https://www.mirrorservice.org/sites/distfiles.gentoo.org/ https://mirror.bytemark.co.uk/gentoo/ https://mirrors.soeasyto.com/distfiles.gentoo.org/"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LEX="flex"
MAKEOPTS="-j4 -l4"
PKGDIR="/var/cache/binpkgs"
PORTAGE_COMPRESS="xz"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="acl bzip2 cli crypt dri fortran gdbm iconv ipv6 libtirpc ncurses nls openmp pam pcre readline seccomp split-usr ssl systemd test-rust udev unicode x86 xattr zlib" ABI_X86="32" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx sse sse2 mmxext" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby31" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 1 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-01-12 18:35:05 UTC
Created attachment 882140 [details]
build.log.xz
Comment 2 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2024-01-24 16:54:50 UTC
That i686-specific?
Comment 3 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-02-20 07:02:56 UTC
I think this might be https://github.com/networkx/networkx/issues/5913.
Comment 4 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-02-20 07:07:53 UTC
I don't think it's a recent regression at least so continuing w/ stabilisation
Comment 5 Larry the Git Cow gentoo-dev 2024-02-20 10:27:27 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9bf5925b7d1b00bc94515800761c57cea44f79e6

commit 9bf5925b7d1b00bc94515800761c57cea44f79e6
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2024-02-20 08:15:39 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-02-20 10:24:14 +0000

    dev-python/networkx: skip TSP test on x86
    
    The test gets a valid solution but an unexpected on on x86. It's a somewhat
    long-standing failure, so skip for now on x86.
    
    Bug: https://github.com/networkx/networkx/issues/5913
    Bug: https://bugs.gentoo.org/921958
    Signed-off-by: Sam James <sam@gentoo.org>

 dev-python/networkx/networkx-3.2.1.ebuild | 7 +++++++
 1 file changed, 7 insertions(+)