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Bug 919885 - sci-biology/paml-4.9j - treesub.c: error: passing argument 3 of printSeqs from incompatible pointer type [-Wincompatible-pointer-types]
Summary: sci-biology/paml-4.9j - treesub.c: error: passing argument 3 of printSeqs fro...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords: PullRequest
Depends on:
Blocks: c99-porting
  Show dependency tree
 
Reported: 2023-12-14 14:48 UTC by Toralf Förster
Modified: 2024-04-01 18:24 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---

Attachments
emerge-info.txt (emerge-info.txt,16.49 KB, text/plain)
2023-12-14 14:48 UTC, Toralf Förster 		Details
emerge-history.txt (emerge-history.txt,19.14 KB, text/plain)
2023-12-14 14:48 UTC, Toralf Förster 		Details
environment (environment,57.84 KB, text/plain)
2023-12-14 14:48 UTC, Toralf Förster 		Details
etc.portage.tar.xz (etc.portage.tar.xz,23.85 KB, application/x-xz)
2023-12-14 14:48 UTC, Toralf Förster 		Details
qlist-info.txt (qlist-info.txt,42.20 KB, text/plain)
2023-12-14 14:48 UTC, Toralf Förster 		Details
sci-biology:paml-4.9j:20231214-144044.log (sci-biology:paml-4.9j:20231214-144044.log,7.04 KB, text/plain)
2023-12-14 14:48 UTC, Toralf Förster 		Details
temp.tar.xz (temp.tar.xz,14.86 KB, application/x-xz)
2023-12-14 14:48 UTC, Toralf Förster 		Details
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Description Toralf Förster gentoo-dev 2023-12-14 14:48:50 UTC 
too long lines were shrinked:

x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wno-unused-result  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  baseml.c tools.o paml.h  -lm -o baseml
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wno-unused-result  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  basemlg.c tools.o paml.h  -lm -o basemlg
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wno-unused-result  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  codeml.c tools.o paml.h  -lm -o codeml
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wno-unused-result  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  evolver.c tools.o paml.h  -lm -o evolver
In file included from baseml.c:131:
treesub.c: In function IdenticalSeqs:
treesub.c:1310:33: error: passing argument 3 of printSeqs from incompatible pointer type [-Wincompatible-pointer-types]
 1310 |       printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1);
      |                              ~~~^~~~~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no_multilib_systemd-20231213-230004

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-14 *
clang/llvm (if any):
Python 3.11.6
The following VMs are available for generation-2:
*)	Eclipse Temurin JDK 8.382_p05 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm

php cli (if any):
go version go1.21.5 linux/amd64

  HEAD of ::gentoo
commit 31d5d452f5bcee9fb8c11b4e584d032af10326d4
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Thu Dec 14 14:02:01 2023 +0000

    2023-12-14 14:02:01 UTC

emerge -qpvO sci-biology/paml
[ebuild  N    ] sci-biology/paml-4.9j
Comment 1 Toralf Förster gentoo-dev 2023-12-14 14:48:51 UTC 
Created attachment 879402 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2023-12-14 14:48:52 UTC 
Created attachment 879403 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2023-12-14 14:48:53 UTC 
Created attachment 879404 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2023-12-14 14:48:54 UTC 
Created attachment 879405 [details]
etc.portage.tar.xz
Comment 5 Toralf Förster gentoo-dev 2023-12-14 14:48:55 UTC 
Created attachment 879406 [details]
qlist-info.txt
Comment 6 Toralf Förster gentoo-dev 2023-12-14 14:48:56 UTC 
Created attachment 879407 [details]
sci-biology:paml-4.9j:20231214-144044.log
Comment 7 Toralf Förster gentoo-dev 2023-12-14 14:48:57 UTC 
Created attachment 879408 [details]
temp.tar.xz