Bug 919254 – sci-biology/bfast-0.7.0a - RGMatch.c: error: passing argument 1 of feof from incompatible pointer type [-Wincompatible-pointer-types]

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Toralf Förster 2023-12-05 08:11:00 UTC]

x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..     -O2 -pipe -march=native -fno-diagnostics-color -Wall -pthread  -c -o RGIndexAccuracy.o RGIndexAccuracy.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..     -O2 -pipe -march=native -fno-diagnostics-color -Wall -pthread  -c -o RGIndexExons.o RGIndexExons.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..     -O2 -pipe -march=native -fno-diagnostics-color -Wall -pthread  -c -o RGIndexLayout.o RGIndexLayout.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..     -O2 -pipe -march=native -fno-diagnostics-color -Wall -pthread  -c -o RGMatch.o RGMatch.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..     -O2 -pipe -march=native -fno-diagnostics-color -Wall -pthread  -c -o RGMatches.o RGMatches.c
RGMatch.c: In function RGMatchRead:
RGMatch.c:23:25: error: passing argument 1 of feof from incompatible pointer type [-Wincompatible-pointer-types]
   23 |                 if(feof(fp) != 0) {
      |                         ^~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_gnome_systemd-20231123-162118

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10
 [2] x86_64-pc-linux-gnu-14 *
clang/llvm (if any):
clang version 17.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/17/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/17
17.0.6
Python 3.11.7
Available Ruby profiles:
  [1]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.73.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 11.0.20.1_p1 [openjdk-bin-11]
2)	Eclipse Temurin JDK 17.0.8.1_p1 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.1_p12 [openjdk-bin-21]
4)	Eclipse Temurin JDK 8.382_p05 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11 
  [3]   openjdk-bin-17 
  [4]   openjdk-bin-21  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.2.8
php cli (if any):
  [1]   php8.1
  [2]   php8.2 *
go version go1.21.4 linux/amd64

  HEAD of ::gentoo
commit c244819d9d10956900204b1f0d54b0b1424a6b57
Author: Repository mirror & CI <[e-mail]>
Date:   Tue Dec 5 06:01:57 2023 +0000

    2023-12-05 06:01:56 UTC

emerge -qpvO sci-biology/bfast
[ebuild  N    ] sci-biology/bfast-0.7.0a  USE="-test"

[Comment 1 Toralf Förster 2023-12-05 08:11:01 UTC]

Created attachment 877301 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2023-12-05 08:11:02 UTC]

Created attachment 877302 [details]
emerge-history.txt.xz

[Comment 3 Toralf Förster 2023-12-05 08:11:03 UTC]

Created attachment 877303 [details]
environment

[Comment 4 Toralf Förster 2023-12-05 08:11:04 UTC]

Created attachment 877304 [details]
etc.clang.tar.xz

[Comment 5 Toralf Förster 2023-12-05 08:11:05 UTC]

Created attachment 877305 [details]
etc.portage.tar.xz

[Comment 6 Toralf Förster 2023-12-05 08:11:06 UTC]

Created attachment 877306 [details]
logs.tar.xz

[Comment 7 Toralf Förster 2023-12-05 08:11:07 UTC]

Created attachment 877307 [details]
qlist-info.txt.xz

[Comment 8 Toralf Förster 2023-12-05 08:11:08 UTC]

Created attachment 877308 [details]
sci-biology:bfast-0.7.0a:20231205-064340.log

[Comment 9 Toralf Förster 2023-12-05 08:11:09 UTC]

Created attachment 877309 [details]
temp.tar.xz