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Bug 916461 - dev-python/pythran-0.14.0: fails tests with convnet_run00.cpython-311-sparc64-linux-gnu.so: undefined symbol: cblas_sgemm
Summary: dev-python/pythran-0.14.0: fails tests with convnet_run00.cpython-311-sparc64...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Python Gentoo Team
URL:
Whiteboard:
Keywords: TESTFAILURE
Depends on:
Blocks: 915926 916250
  Show dependency tree
 
Reported: 2023-10-29 04:34 UTC by Sam James
Modified: 2024-02-19 21:55 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log.xz (build.log.xz,101.96 KB, application/x-xz)
2023-10-29 04:35 UTC, Sam James
Details

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Description Sam James archtester Gentoo Infrastructure gentoo-dev Security 2023-10-29 04:34:38 UTC
FAILED pythran/tests/test_advanced.py::TestAdvanced::test_matmul_operator - I...
FAILED pythran/tests/test_ipython.py::TestIpythonMagic::test_loadext_and_run
FAILED pythran/tests/test_cases.py::TestCases::test_euclidean_distance_square_run0
FAILED pythran/tests/test_ipython.py::TestIpythonMagic::test_loadext_and_run_timeit_twice
FAILED pythran/tests/test_numpy_func2.py::TestNumpyFunc2::test_matrix_power0
FAILED pythran/tests/test_numpy_func2.py::TestNumpyFunc2::test_matrix_power1
FAILED pythran/tests/test_numpy_func2.py::TestNumpyFunc2::test_matrix_power2
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot18 - Import...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot14b - Impor...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot21 - Import...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot9 - ImportE...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot19 - Import...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot12b - Impor...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot15 - Import...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot22 - Import...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot7 - ImportE...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot16 - Import...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot13 - Import...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot23 - Import...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot20 - Import...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot11 - Import...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot17 - Import...
FAILED pythran/tests/test_numpy_func3.py::TestNumpyFunc3::test_dot5 - ImportE...
FAILED pythran/tests/test_cases.py::TestCases::test_convnet_run0 - ImportErro...
=== 24 failed, 3560 passed, 56 skipped, 1419 warnings in 1525.38s (0:25:25) ====
 * ERROR: dev-python/pythran-0.14.0::gentoo failed (test phase):
 *   pytest failed with python3.11

----

# emerge --info
Portage 3.0.54 (python 3.11.6-final-0, default/linux/sparc/17.0/64ul/systemd/merged-usr, gcc-13, glibc-2.38-r7, 6.1.50 sparc64)
=================================================================
System uname: Linux-6.1.50-sparc64-sun4v-with-glibc2.38
KiB Mem:   531345984 total, 454922496 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sun, 29 Oct 2023 03:46:57 +0000
sh bash 5.2_p15-r7
ld GNU ld (Gentoo 2.41 p2) 2.41.0
app-misc/pax-utils:        1.3.7::gentoo
app-shells/bash:           5.2_p15-r7::gentoo
dev-lang/perl:             5.38.0-r1::gentoo
dev-lang/python:           3.11.6::gentoo, 3.12.0_p1::gentoo
dev-lang/rust-bin:         1.73.0::gentoo
dev-util/cmake:            3.27.7::gentoo
dev-util/meson:            1.2.3::gentoo
sys-apps/baselayout:       2.14::gentoo
sys-apps/sandbox:          2.38::gentoo
sys-apps/systemd:          254.5::gentoo
sys-devel/autoconf:        2.71-r7::gentoo
sys-devel/automake:        1.16.5-r1::gentoo
sys-devel/binutils:        2.41-r2::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/gcc:             13.2.1_p20231014::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-devel/libtool:         2.4.7-r1::gentoo
sys-devel/make:            4.4.1-r1::gentoo
sys-kernel/linux-headers:  6.5-r1::gentoo (virtual/os-headers)
sys-libs/glibc:            2.38-r7::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: False
    sync-rsync-extra-opts: 
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-max-age: 3

Installed sets: @main
ACCEPT_KEYWORDS="sparc ~sparc"
ACCEPT_LICENSE="*"
CBUILD="sparc64-unknown-linux-gnu"
CFLAGS="-O2 -mcpu=niagara4 -pipe"
CHOST="sparc64-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d"
CXXFLAGS="-O2 -mcpu=niagara4 -pipe"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--jobs=8"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -mcpu=niagara4 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -mcpu=niagara4 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LEX="flex"
MAKEOPTS="-j150"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="acl big-endian bzip2 cli crypt dri fortran gdbm iconv ipv6 libtirpc llvm-libunwind ncurses nls nptl openmp pam pcre readline sparc ssl systemd test-rust udev unicode xattr zlib" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby31" VIDEO_CARDS="fbdev mga r128 radeon dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 1 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2023-10-29 04:35:17 UTC
Created attachment 873629 [details]
build.log.xz
Comment 2 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2023-10-29 04:43:15 UTC
Curious.  These are the same failures I've seen on python3.12 on amd64.
Comment 3 Larry the Git Cow gentoo-dev 2023-10-29 06:50:40 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a94d9ab3c28fa4ac98993b5e4c44149f03705873

commit a94d9ab3c28fa4ac98993b5e4c44149f03705873
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2023-10-29 06:27:27 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2023-10-29 06:50:26 +0000

    dev-python/pythran: fix test linkage with blas
    
    Closes: https://bugs.gentoo.org/916461
    Signed-off-by: Sam James <sam@gentoo.org>

 dev-python/pythran/pythran-0.14.0.ebuild | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)
Comment 4 Larry the Git Cow gentoo-dev 2024-02-19 21:55:07 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ae14cdba12adb50c1ef69291d28d4be247217c8a

commit ae14cdba12adb50c1ef69291d28d4be247217c8a
Author:     Eli Schwartz <eschwartz93@gmail.com>
AuthorDate: 2024-02-19 20:55:35 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-02-19 21:54:38 +0000

    dev-python/pythran: add comment explaining an inscrutable sed
    
    It's not obvious why this change needs to be made in installed code, and
    in particular why it is test-only.
    
    I'm *still* not sure why this is the best change, but at least with a
    link people can follow the logic when investigating.
    
    Bug: https://bugs.gentoo.org/916461
    Signed-off-by: Eli Schwartz <eschwartz93@gmail.com>
    Signed-off-by: Sam James <sam@gentoo.org>

 dev-python/pythran/pythran-0.15.0-r1.ebuild | 1 +
 1 file changed, 1 insertion(+)