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Bug 913037 - sci-chemistry/autodock_vina-1.1.2-r1 - /.../progress.hpp: error: #error This header is deprecated and will be removed. (You can de
Summary: sci-chemistry/autodock_vina-1.1.2-r1 - /.../progress.hpp: error: #error This ...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Chemistry-Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2023-08-26 08:08 UTC by Toralf Förster
Modified: 2024-03-02 21:15 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.32 KB, text/plain)
2023-08-26 08:08 UTC, Toralf Förster
Details
emerge-history.txt.xz (emerge-history.txt.xz,46.69 KB, application/x-xz)
2023-08-26 08:08 UTC, Toralf Förster
Details
environment (environment,76.07 KB, text/plain)
2023-08-26 08:08 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,788 bytes, application/x-xz)
2023-08-26 08:08 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,52.54 KB, application/x-xz)
2023-08-26 08:08 UTC, Toralf Förster
Details
sci-chemistry:autodock_vina-1.1.2-r1:20230825-225306.log (sci-chemistry:autodock_vina-1.1.2-r1:20230825-225306.log,19.22 KB, text/plain)
2023-08-26 08:08 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2023-08-26 08:08:31 UTC
                 from ../../../src/lib/parallel_mc.cpp:24:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
In file included from ../../../src/lib/parallel_progress.h:26,
                 from ../../../src/lib/parallel_mc.cpp:26:
/usr/include/boost/progress.hpp:23:3: error: #error This header is deprecated and will be removed. (You can define BOOST_TIMER_ENABLE_DEPRECATED to suppress this error.)
   23 | # error This header is deprecated and will be removed. (You can define BOOST_TIMER_ENABLE_DEPRECATED to suppress this error.)
      |   ^~~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no_multilib-20230822-074737

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10
 [2] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
clang version 16.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/16/bin
Configuration file: /etc/clang/clang.cfg
/usr/lib/llvm/16
16.0.6
Python 3.11.5
Available Ruby profiles:
  [1]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.71.1 *
The following VMs are available for generation-2:
1)	IcedTea JDK 3.16.0 [icedtea-bin-8]
*)	Eclipse Temurin JDK 17.0.7_p7 [openjdk-bin-17]
Available Java Virtual Machines:
  [1]   icedtea-bin-8 
  [2]   openjdk-bin-17  system-vm

php cli (if any):
go version go1.21.0 linux/amd64

  HEAD of ::gentoo
commit da5690923562bbdea7fc00f6056d179a44cc44e8
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Fri Aug 25 21:31:42 2023 +0000

    2023-08-25 21:31:42 UTC

emerge -qpvO sci-chemistry/autodock_vina
[ebuild  N    ] sci-chemistry/autodock_vina-1.1.2-r1  USE="-debug"
Comment 1 Toralf Förster gentoo-dev 2023-08-26 08:08:32 UTC
Created attachment 868737 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2023-08-26 08:08:33 UTC
Created attachment 868738 [details]
emerge-history.txt.xz
Comment 3 Toralf Förster gentoo-dev 2023-08-26 08:08:34 UTC
Created attachment 868739 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2023-08-26 08:08:35 UTC
Created attachment 868740 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2023-08-26 08:08:36 UTC
Created attachment 868741 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2023-08-26 08:08:37 UTC
Created attachment 868742 [details]
sci-chemistry:autodock_vina-1.1.2-r1:20230825-225306.log
Comment 7 Larry the Git Cow gentoo-dev 2024-03-02 21:15:02 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8ff06565cfa9e2d6114008541f2fae2c23f9e12c

commit 8ff06565cfa9e2d6114008541f2fae2c23f9e12c
Author:     Alexey Shvetsov <alexxy@gentoo.org>
AuthorDate: 2024-03-02 21:14:38 +0000
Commit:     Alexey Shvetsov <alexxy@gentoo.org>
CommitDate: 2024-03-02 21:14:38 +0000

    sci-chemistry/autodock_vina: Fix build with recent boost
    
    Closes: https://bugs.gentoo.org/913037
    Closes: https://bugs.gentoo.org/924622
    Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>

 sci-chemistry/autodock_vina/autodock_vina-1.1.2-r1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)