Multiple errors from reading /usr/include/google/protobuf/map.h, /usr/include/absl/container/internal/compressed_tuple.h, /usr/include/google/protobuf/port_def.inc and so on Reproducible: Always Steps to Reproduce: 1. emerge update system with both protobuf and onnx Portage 3.0.51 (python 3.11.4-final-0, default/linux/amd64/17.1/no-multilib, gcc-13, glibc-2.37-r4, 6.4.10-gentoo x86_64) ================================================================= System uname: Linux-6.4.10-gentoo-x86_64-AMD_Ryzen_9_7950X_16-Core_Processor-with-glibc2.37 KiB Mem: 131626788 total, 1330524 free KiB Swap: 268435452 total, 268435452 free Timestamp of repository gentoo: Tue, 22 Aug 2023 13:00:01 +0000 Head commit of repository gentoo: 8311f2148eb6108480f822be79e038fec074a87b sh bash 5.2_p15-r6 ld GNU ld (Gentoo 2.41 p2) 2.41.0 app-misc/pax-utils: 1.3.7::gentoo app-shells/bash: 5.2_p15-r6::gentoo dev-java/java-config: 2.3.1-r1::gentoo dev-lang/perl: 5.38.0-r1::gentoo dev-lang/python: 3.11.4::gentoo, 3.12.0_rc1_p3::gentoo dev-lang/rust: 1.71.1::gentoo dev-util/cmake: 3.27.3-r1::gentoo dev-util/meson: 1.2.1-r1::gentoo sys-apps/baselayout: 2.14::gentoo sys-apps/openrc: 0.48::gentoo sys-apps/sandbox: 2.38::gentoo sys-devel/autoconf: 2.13-r8::gentoo, 2.71-r7::gentoo sys-devel/automake: 1.16.5-r1::gentoo sys-devel/binutils: 2.40-r7::gentoo, 2.41-r1::gentoo sys-devel/binutils-config: 5.5::gentoo sys-devel/clang: 15.0.7-r3::gentoo, 16.0.6::gentoo sys-devel/gcc: 13.2.0::gentoo sys-devel/gcc-config: 2.11::gentoo sys-devel/libtool: 2.4.7-r1::gentoo sys-devel/lld: 15.0.7::gentoo, 16.0.6::gentoo sys-devel/llvm: 15.0.7-r3::gentoo, 16.0.6::gentoo sys-devel/make: 4.4.1-r1::gentoo sys-kernel/linux-headers: 6.4::gentoo (virtual/os-headers) sys-libs/glibc: 2.37-r4::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 volatile: False sync-rsync-verify-metamanifest: yes sync-rsync-verify-max-age: 24 sync-rsync-verify-jobs: 16 sync-rsync-extra-opts: ACCEPT_KEYWORDS="amd64 ~*" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=znver4 -O2 -pipe -flto" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=znver4 -O2 -pipe -flto" DISTDIR="/var/cache/distfiles" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.vectranet.pl/gentoo/ http://mirror.leaseweb.com/gentoo/ http://mirror.eu.oneandone.net/linux/distributions/gentoo/gentoo/ http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ http://mirror.netcologne.de/gentoo/ http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://mirror.init7.net/gentoo/ http://tux.rainside.sk/gentoo/ http://gentoo.mirror.web4u.cz/" LANG="en_US" LC_ALL="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LEX="flex" MAKEOPTS="-j30" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="X a52 aac aacs acl alsa amd64 bittorrent bluray btrfs bzip2 cli connection-sharing context contrib contribdnn crypt cups cxx dbus dcaenc dhcpcd dri dts emboss exif fam fbcon fdk ffmpeg fontconfig fortran frei0r ftp gdbm geoclue geolocation gimp gps graphite gui iconv icu iptables jpeg kde lame lapack latex libass libglvnd libtirpc llvm lm-sensors lto mac minizip mpi ncurses no-multilib nptl nvenc ogg opencl opengl openmp opus pam parallel-compiler pcre plasma pthread pulseaudio qml qt5 qt6 readline resolvconf romio rustfmt sdl seccomp spirv split-usr ssd ssl svg syslog taglib tbb tensorpipe test-rust text theora threads tiff truetype unicode v4l vaapi vector-icons vorbis vulkan webp x264 x265 xattr xla xml zlib" ABI_X86="64" ADA_TARGET="gnat_2021" AMDGPU_TARGETS="gfx1031" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="stage" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer nlpsolver" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby32" VIDEO_CARDS="amdgpu fbdev amd radeon radeonsi vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Please include the full build.log.
Created attachment 868495 [details] full build log
same here.
Upstream bug: https://github.com/onnx/onnx/issues/4992
A patched sci-libs/onnx-1.14.1 is available in my overlay: https://github.com/stefantalpalaru/gentoo-overlay As discussed in the upstream bug report, simply changing the C++ standard in CMakeLists.txt works: https://github.com/onnx/onnx/pull/5119/files That PR reached the "main" branch, but was not cherry-picked in the branch where they do releases from: https://github.com/onnx/onnx/commits/rel-1.14.1
same here, and even sci-libs/onnx-1.13.1 crashes the same way. Maybe the configured "-std=gnu++11" is not sufficient for C++14.
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1ecf45d471c13e219317798836096f4c34fe64a1 commit 1ecf45d471c13e219317798836096f4c34fe64a1 Author: Alfredo Tupone <tupone@gentoo.org> AuthorDate: 2023-09-01 10:32:00 +0000 Commit: Alfredo Tupone <tupone@gentoo.org> CommitDate: 2023-09-01 10:33:29 +0000 sci-libs/onnx: use cxx 144 Closes: https://bugs.gentoo.org/912837 Signed-off-by: Alfredo Tupone <tupone@gentoo.org> sci-libs/onnx/files/onnx-1.14.0-cxx_14.patch | 11 +++++++++++ sci-libs/onnx/{onnx-1.13.1.ebuild => onnx-1.13.1-r1.ebuild} | 2 ++ sci-libs/onnx/{onnx-1.14.0.ebuild => onnx-1.14.0-r1.ebuild} | 2 ++ 3 files changed, 15 insertions(+)
