emerge --quiet --usepkg --buildpkg --binpkg-respect-use=y --newuse --oneshot --update --newuse sys-apps/portage Performing Global Updates (Could take a couple of minutes if you have a lot of binary packages.) @Package basename mismatched, using jaraco-context-4.3.0Traceback (most recent call last): File "/usr/lib/python-exec/python3.10/emerge", line 59, in <module> retval = emerge_main() File "/usr/lib/python3.10/site-packages/_emerge/main.py", line 1299, in emerge_main return run_action(emerge_config) File "/usr/lib/python3.10/site-packages/_emerge/actions.py", line 3418, in run_action and _global_updates( File "/usr/lib/python3.10/site-packages/portage/_global_updates.py", line 41, in _global_updates return _do_global_updates( File "/usr/lib/python3.10/site-packages/portage/_global_updates.py", line 257, in _do_global_updates bindb.update_ents(repo_map, onUpdate=onUpdate) File "/usr/lib/python3.10/site-packages/portage/dbapi/__init__.py", line 413, in update_ents aux_update(cpv, metadata_updates) File "/usr/lib/python3.10/site-packages/portage/dbapi/bintree.py", line 295, in aux_update mybinpkg.update_metadata(mydata) File "/usr/lib/python3.10/site-packages/portage/gpkg.py", line 1155, in update_metadata raise InvalidBinaryPackageFormat( portage.exception.InvalidBinaryPackageFormat: gpkg file structure mismatch in /var/cache/binpkgs/dev-python/jaraco-context/jaraco-context-4.3.0-2.gpkg.tar; files: ['jaraco-context-4.3.0/gpkg-1', 'jaraco-context-4.3.0-1/metadata.tar.zst', 'jaraco-context-4.3.0/image.tar.zst', 'jaraco-context-4.3.0-1/Manifest'] Reproducible: Always Steps to Reproduce: 1. I have no idea to be honest
This failure looks very related to the bug in See Also, but using portage 3.0.47
I haven't seen this in ages. Uploading a bad example binpkg (both sides) would help. This might be with signing but that wasn't mentioned.
I haven't seen this in a while either, so I'm going to leave it closed unless that changes.
I just got what appear to be the same warnings: Performing Global Updates (Could take a couple of minutes if you have a lot of binary packages.) .='update pass' *='binary update' #='/var/db update' @='/var/db move' s='/var/db SLOT move' %='binary move' S='binary SLOT move' p='update /etc/portage/package.*' /var/db/repos/gentoo/profiles/updates/4Q-2023................................... @%@%@%sS@%####################################################################################################################################################***************************************************************************************************************************Package basename mismatched, using kwayland-5.112.0/usr/lib/python3.11/site-packages/portage/dbapi/__init__.py:428: UserWarning: gpkg file structure mismatch in /mnt/Data/cache/gentoo/binpkgs/kde-plasma/kwayland/kwayland-5.112.0-1.gpkg.tar; files: ['kwayland-5.112.0/gpkg-1', 'kwayland-5.112.0-1/metadata.tar.zst', 'kwayland-5.112.0/image.tar.zst', 'kwayland-5.112.0-1/Manifest'] warnings.warn(e) ********Package basename mismatched, using libplasma-5.112.0/usr/lib/python3.11/site-packages/portage/dbapi/__init__.py:428: UserWarning: gpkg file structure mismatch in /mnt/Data/cache/gentoo/binpkgs/kde-plasma/libplasma/libplasma-5.112.0-1.gpkg.tar; files: ['libplasma-5.112.0/gpkg-1', 'libplasma-5.112.0-1/metadata.tar.zst', 'libplasma-5.112.0/image.tar.zst', 'libplasma-5.112.0-1/Manifest'] warnings.warn(e) ****Package basename mismatched, using plasma-activities-5.112.0/usr/lib/python3.11/site-packages/portage/dbapi/__init__.py:428: UserWarning: gpkg file structure mismatch in /mnt/Data/cache/gentoo/binpkgs/kde-plasma/plasma-activities/plasma-activities-5.112.0-1.gpkg.tar; files: ['plasma-activities-5.112.0/gpkg-1', 'plasma-activities-5.112.0-1/metadata.tar.zst', 'plasma-activities-5.112.0/image.tar.zst', 'plasma-activities-5.112.0-1/Manifest'] warnings.warn(e) *Package basename mismatched, using plasma-activities-stats-5.112.0/usr/lib/python3.11/site-packages/portage/dbapi/__init__.py:428: UserWarning: gpkg file structure mismatch in /mnt/Data/cache/gentoo/binpkgs/kde-plasma/plasma-activities-stats/plasma-activities-stats-5.112.0-1.gpkg.tar; files: ['plasma-activities-stats-5.112.0/gpkg-1', 'plasma-activities-stats-5.112.0-1/metadata.tar.zst', 'plasma-activities-stats-5.112.0/image.tar.zst', 'plasma-activities-stats-5.112.0-1/Manifest'] warnings.warn(e) ************************
There's two files in /mnt/Data/cache/gentoo/binpkgs/kde-plasma/kwayland/: kwayland-5.112.0-1.gpkg.tar kwayland-5.112.0-1.gpkg.tar.28812 Should I upload them here?
Yes please. I wonder why this is coming up now when pkgmoves seem to have been fine until now.
Created attachment 875744 [details] kwayland-5.112.0-1.gpkg.tar
Created attachment 875745 [details] kwayland-5.112.0-1.gpkg.tar.28812
Note that that I have thousands of binary packages. I have FEATURES="buildpkg" in my make.conf so every single emerge I do has a binary package stored. Only those four threw this warning, but I guess they were the only ones affected by the pkgmove?
Possibly triggered by binarytree.getname returning an existing but incorrect package path due to bug 919668.
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/proj/portage.git/commit/?id=cc372a52ee2aba153c0d7c2290306b7f623e8b7c commit cc372a52ee2aba153c0d7c2290306b7f623e8b7c Author: Zac Medico <zmedico@gentoo.org> AuthorDate: 2023-12-09 23:58:07 +0000 Commit: Zac Medico <zmedico@gentoo.org> CommitDate: 2023-12-10 01:27:43 +0000 bindbapi: add SIZE to _pkg_str_aux_keys The _pkg_str_aux_keys are used inside dbapi.update_ents, and need to contain SIZE in order for the fakedbapi _instance_key_multi_instance method to operate correctly. Incorrect operation of _instance_key_multi_instance could prevent binarytree.inject from removing an old instance from its internal state. It could also trigger a KeyError in bindbapi.aux_update as in bug 918597, since it could cause binarytree.getname to return a non-existent path. It could also cause binarytree.getname to return an existing but incorrect path, which might trigger an InvalidBinaryPackageFormat exception as in bug 906675. Bug: https://bugs.gentoo.org/906675 Bug: https://bugs.gentoo.org/918597 Bug: https://bugs.gentoo.org/919668 Signed-off-by: Zac Medico <zmedico@gentoo.org> lib/portage/dbapi/bintree.py | 3 +++ 1 file changed, 3 insertions(+)
