File "/var/tmp/portage/media-sound/beets-1.6.0-r1/work/beets-1.6.0_python3.11/lib/beets/autotag/__init__.py", line 23, in <module> from .hooks import ( # noqa File "/var/tmp/portage/media-sound/beets-1.6.0-r1/work/beets-1.6.0_python3.11/lib/beets/autotag/hooks.py", line 26, in <module> from jellyfish import levenshtein_distance File "/usr/lib/python3.11/site-packages/jellyfish/__init__.py", line 3, in <module> from ._rustyfish import * ModuleNotFoundError: No module named 'jellyfish._rustyfish' * ERROR: media-sound/beets-1.6.0-r1::gentoo failed (install phase): * (no error message) ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no_multilib_hardened-j4-20230506-004510 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10 [2] x86_64-pc-linux-gnu-13 * clang/llvm (if any): clang version 16.0.3 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/16/bin Configuration file: /etc/clang/clang.cfg /usr/lib/llvm/16 16.0.3 Python 3.11.3 Available Ruby profiles: [1] ruby30 (with Rubygems) * Available Rust versions: [1] rust-1.69.0 * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 17.0.6_p10 [openjdk-bin-17] *) Eclipse Temurin JDK 8.362_p09 [openjdk-bin-8] 3) Eclipse Temurin JRE 17.0.6_p10 [openjdk-jre-bin-17] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm [2] openjdk-bin-17 [3] openjdk-jre-bin-17 php cli (if any): go version go1.20.3 linux/amd64 HEAD of ::gentoo commit 7a3ecd5382e3d1b8dfed52c1ed7a48d54c069d0e Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Mon May 8 17:47:00 2023 +0000 2023-05-08 17:46:59 UTC emerge -qpvO media-sound/beets [ebuild N ] media-sound/beets-1.6.0-r1 USE="-doc -test" PYTHON_SINGLE_TARGET="python3_11 -python3_10"
Created attachment 861341 [details] emerge-info.txt
Created attachment 861342 [details] emerge-history.txt.bz2
Created attachment 861343 [details] environment
Created attachment 861344 [details] etc.clang.tar.bz2
Created attachment 861345 [details] etc.portage.tar.bz2
Created attachment 861346 [details] media-sound:beets-1.6.0-r1:20230508-180028.log
Created attachment 861347 [details] temp.tar.bz2
Portage 3.0.47 (python 3.11.3-final-0, default/linux/amd64/17.1/desktop, gcc-13, glibc-2.37-r3, 6.0.0-pf5-x86_64-GP-PF-ST-nvidia x86_64) ================================================================= System uname: Linux-6.0.0-pf5-x86_64-GP-PF-ST-nvidia-x86_64-12th_Gen_Intel-R-_Core-TM-_i9-12900K-with-glibc2.37 KiB Mem: 32606828 total, 18297352 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Mon, 29 May 2023 16:30:01 +0000 Head commit of repository gentoo: cfb0b72455b9ad908e042699297dd50de4072d4f Head commit of repository antonellocaroli: cce4e0e6bea2d646cf4854862cf19f48f9c1d6bb sh bash 5.2_p15-r3 ld GNU ld (Gentoo 2.40 p5) 2.40.0 app-misc/pax-utils: 1.3.7::gentoo app-shells/bash: 5.2_p15-r3::gentoo dev-java/java-config: 2.3.1::gentoo dev-lang/perl: 5.36.1-r2::gentoo dev-lang/python: 3.11.3::gentoo dev-lang/rust-bin: 1.69.0::gentoo dev-util/cmake: 3.26.4-r1::gentoo dev-util/meson: 1.1.0::gentoo sys-apps/baselayout: 2.13-r1::gentoo sys-apps/openrc: 0.47.1::gentoo sys-apps/sandbox: 2.30-r1::gentoo sys-devel/autoconf: 2.71-r6::gentoo sys-devel/automake: 1.16.5-r1::gentoo sys-devel/binutils: 2.40-r5::gentoo sys-devel/binutils-config: 5.5::gentoo sys-devel/clang: 16.0.4::gentoo sys-devel/gcc: 13.1.1_p20230527::gentoo sys-devel/gcc-config: 2.11::gentoo sys-devel/libtool: 2.4.7-r1::gentoo sys-devel/lld: 16.0.4::gentoo sys-devel/llvm: 16.0.4::gentoo sys-devel/make: 4.4.1-r1::gentoo sys-kernel/linux-headers: 6.3::gentoo (virtual/os-headers) sys-libs/glibc: 2.37-r3::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: git sync-uri: https://github.com/gpoverlay/gpoverlay820 priority: -1000 volatile: False local location: /var/db/repos/local masters: gentoo volatile: False antonellocaroli location: /var/db/repos/antonellocaroli sync-type: git sync-uri: https://github.com/x86gentoo/antonellocaroli.git masters: gentoo priority: 10 volatile: False ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O3 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O3 -pipe" DISTDIR="/var/cache/distfiles" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-O3 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O3 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_GB.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LEX="flex" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_EXTRA_OPTS="--exclude-from=/etc/portage/rsync_excludes" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="X a52 aac acl acpi alsa amd64 bindist branding bzip2 cairo cli crypt dbus dri elogind encode exif flac fortran gdbm gif gpm gtk gui iconv icu ipv6 jpeg lcms libnotify libtirpc lm-sensors mad mng mp3 mp4 mpeg ncurses nls nptl ogg opengl openmp orc pam pango pcre pdf png policykit ppds readline sdl seccomp sound spell split-usr ssl startup-notification svg test-rust tiff truetype udev udisks unicode upower usb vorbis vulkan wxwidgets x264 xattr xcb xft xml xv xvid zlib" ABI_X86="64" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby30" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, MAKEOPTS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Same problem here. probably after python3_11 update?
The problem is in jellyfish: Python 3.11.3 (main, May 30 2023, 14:43:52) [GCC 13.1.1 20230520] on linux Type "help", "copyright", "credits" or "license" for more information. >>> import jellyfish Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/usr/lib/python3.11/site-packages/jellyfish/__init__.py", line 3, in <module> from ._rustyfish import * ModuleNotFoundError: No module named 'jellyfish._rustyfish' This occurs with both versions in portage: 0.11.1 0.11.2
And jellyfish can be imported successfully when installed with pip in a virtual environment: $ python -m venv venv $ cd venv/ $ source bin/activate (venv) $ pip install jellyfish (venv) $ python Python 3.11.3 (main, May 30 2023, 14:43:52) [GCC 13.1.1 20230520] on linux Type "help", "copyright", "credits" or "license" for more information. >>> import jellyfish >>>
Can you attach your jellyfish build log?
Created attachment 863604 [details] build.log
Created attachment 863605 [details] build-python3_11.log
Finished release [optimized] target(s) in 6.70s ⚠️ Warning: Couldn't find the symbol `PyInit_jellyfish` in the native library. Python will fail to import this module. If you're using pyo3, check that `#[pymodule]` uses `jellyfish` as module name ... which looks suspicious.
Reproduced, not looked at it beyond that. ccing ionen as maturin maintainer in case any ideas
(In reply to Sam James from comment #16) > Reproduced, not looked at it beyond that. ccing ionen as maturin maintainer > in case any ideas https://github.com/jamesturk/jellyfish/commit/2ebc2c647eafce3036d12814b0247cdd55e0be4d ... maybe?
(In reply to Sam James from comment #17) > (In reply to Sam James from comment #16) > > Reproduced, not looked at it beyond that. ccing ionen as maturin maintainer > > in case any ideas > > https://github.com/jamesturk/jellyfish/commit/ > 2ebc2c647eafce3036d12814b0247cdd55e0be4d ... maybe? Sounds likely. That's not actually musl related, and package.metadata.maturin.name been deprecated since maturin-0.14.16 -- probably getting ignored now in 1.x
thanks! Looking at it when not drifting off, it makes a lot more sense too.
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f9c61a9fb3165f522579b530ffab4460c06b2353 commit f9c61a9fb3165f522579b530ffab4460c06b2353 Author: Michał Górny <mgorny@gentoo.org> AuthorDate: 2023-06-12 10:58:05 +0000 Commit: Michał Górny <mgorny@gentoo.org> CommitDate: 2023-06-12 10:58:39 +0000 dev-python/jellyfish: Backport a maturin build fix Backport a build fix for maturin compatibility. It fixes a bug that could result in a broken package being installed. Thanks to Sam for finding the commit. Closes: https://bugs.gentoo.org/905962 Signed-off-by: Michał Górny <mgorny@gentoo.org> .../files/jellyfish-0.11.2-maturin-1.patch | 33 ++++++++++++++++++++++ ...sh-0.11.1.ebuild => jellyfish-0.11.1-r1.ebuild} | 5 ++++ ...sh-0.11.2.ebuild => jellyfish-0.11.2-r1.ebuild} | 4 +++ 3 files changed, 42 insertions(+)
