Initially observed as a guix build failure against dev-scheme/guile-zlib. Reproducible: Always Steps to Reproduce: The following minimal example from guix should be enough to reproduce the failure using ::gentoo only packages: 1. Use clang-based profile, like default/linux/amd64/17.1/systemd/clang/merged-usr 2. Install dev-scheme/guile-3.0.9 and dev-scheme/guile-zlib 3. Create a test file: ;;; $ cat utils.scm (define-module (bug utils) #:use-module (ice-9 match) #:autoload (zlib) (make-zlib-input-port) #:export (decompressed-port)) (define (decompressed-port compression input) "Return an input port where INPUT is decompressed according to COMPRESSION, a symbol such as 'xz." (match compression ('gzip (values (make-zlib-input-port input #:format 'gzip) '())) (_ (error "unsupported compression scheme" compression)))) 4. Trigger the bug: $ guile --fresh-auto-compile utils.scm ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling utils.scm ;;; WARNING: compilation of utils.scm failed: ;;; In procedure bytevector-u8-ref: Argument 2 out of range: 185581 Actual Results: ;;; WARNING: compilation of utils.scm failed: ;;; In procedure bytevector-u8-ref: Argument 2 out of range: 185581 Expected Results: Compilation should succeed. For this case it's enough to rebuild dev-scheme/guile-zlib to avoid .go file corruption: $ FEATURES="nostrip -splitdebug" emerge -1 --quiet dev-scheme/guile-zlib $ guile --fresh-auto-compile utils.scm ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /root/guix/z/utils.scm ;;; compiled /root/.cache/guile/ccache/3.0-LE-8-4.6/root/guix/z/utils.scm.go Note: compilation succeeded
$ emerge --info Portage 3.0.47 (python 3.11.3-final-0, default/linux/amd64/17.1/systemd/clang/merged-usr, gcc-12, glibc-2.37-r2, 6.3.1 x86_64) ================================================================= System uname: Linux-6.3.1-x86_64-AMD_Ryzen_9_5950X_16-Core_Processor-with-glibc2.37 KiB Mem: 131857692 total, 66839176 free KiB Swap: 197786108 total, 197786108 free Head commit of repository gentoo: ae8246c2645c785a1040650b3ff67d503cc23376 Head commit of repository nix-guix: 64edf8fe00c3fb3bcfc53aeb9287a4d3fb7cc882 Head commit of repository slyfox: 88e3aa67d93db149312e1387ef5e57a5b0cf05a1 sh bash 5.2_p15-r2 ld GNU ld (Gentoo 2.40 p4) 2.40.0 app-misc/pax-utils: 1.3.7::gentoo app-shells/bash: 5.2_p15-r2::gentoo dev-java/java-config: 2.3.1::gentoo dev-lang/perl: 5.36.1-r1::gentoo dev-lang/python: 3.10.11::gentoo, 3.11.3::gentoo dev-lang/rust: 1.69.0-r1::gentoo dev-util/cmake: 3.26.3::gentoo dev-util/meson: 1.1.0::gentoo sys-apps/baselayout: 2.13-r1::gentoo sys-apps/sandbox: 2.30-r1::gentoo sys-apps/systemd: 253.4::gentoo sys-devel/autoconf: 2.71-r6::gentoo sys-devel/automake: 1.16.5-r1::gentoo sys-devel/binutils: 2.40-r4::gentoo sys-devel/binutils-config: 5.5::gentoo sys-devel/clang: 15.0.7-r1::gentoo, 16.0.3::gentoo sys-devel/gcc: 12.2.1_p20230304::gentoo, 13.1.0-r1::gentoo sys-devel/gcc-config: 2.10::gentoo sys-devel/libtool: 2.4.7-r1::gentoo sys-devel/lld: 15.0.7::gentoo, 16.0.3::gentoo sys-devel/llvm: 15.0.7::gentoo, 16.0.3::gentoo sys-devel/make: 4.4.1::gentoo sys-kernel/linux-headers: 6.3::gentoo (virtual/os-headers) sys-libs/glibc: 2.37-r2::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: git sync-uri: https://github.com/gentoo/gentoo.git priority: -1000 volatile: False nix-guix location: /var/db/repos/nix-guix sync-type: git sync-uri: https://github.com/trofi/nix-guix-gentoo.git masters: gentoo volatile: False slyfox location: /var/db/repos/slyfox sync-type: git sync-uri: https://github.com/trofi/slyfox-gentoo.git masters: gentoo volatile: False ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="@FREE" ADDR2LINE="llvm-addr2line" AR="llvm-ar" AS="clang -c" CBUILD="x86_64-pc-linux-gnu" CC="clang" CFLAGS="-O2 -pipe -fdiagnostics-show-option -frecord-gcc-switches" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/sandbox.d" CPP="clang-cpp" CXX="clang++" CXXFLAGS="-O2 -pipe" DISTDIR="/bound/distfiles" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live config-protect-if-modified distlocks ebuild-locks fail-clean fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="C.UTF8" LD="ld.lld" LDFLAGS="-Wl,-O1 -Wl,--as-needed -fuse-ld=lld -rtlib=compiler-rt -unwindlib=libunwind -Wl,--as-needed -Wl,--hash-style=gnu" LEX="flex" MAKEOPTS="-j17 -l17" NM="llvm-nm" OBJCOPY="llvm-objcopy" OBJDUMP="llvm-objdump" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/dev/shm" RANLIB="llvm-ranlib" READELF="llvm-readelf" SHELL="/bin/bash" STRINGS="llvm-strings" STRIP="llvm-strip" USE="acl amd64 bzip2 clang cli crypt dri fortran gdbm iconv ipv6 libglvnd libtirpc llvm-libunwind multilib ncurses nls nptl openmp pam pcre readline seccomp ssl systemd test-rust udev unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby30" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: ARFLAGS, ASFLAGS, CCLD, CONFIG_SHELL, CPPFLAGS, CTARGET, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS, SIZE, YACC, YFLAGS
As a workaround the below seems to be enough to unbreak the example: # add to dev-scheme/guile-zlib src_install() { default # Workaround llvm-strip problem of mangling guile ELF debug # sections: https://bugs.gentoo.org/905898 dostrip -x "/usr/$(get_libdir)/guile" } For real `guix` package I had to add the workaround to at least 3 packages: dev-scheme/guile-zlib, dev-scheme/guile-zstd, dev-scheme/guile-lzlib. Otherwise the build fails.
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3a1364a6a38575dea322388e778a20d2d008f7db commit 3a1364a6a38575dea322388e778a20d2d008f7db Author: Maciej Barć <xgqt@gentoo.org> AuthorDate: 2023-05-16 11:46:01 +0000 Commit: Maciej Barć <xgqt@gentoo.org> CommitDate: 2023-05-16 11:50:43 +0000 dev-scheme/guile-lzlib: do not strip guile bytecode Bug: https://bugs.gentoo.org/905898 Signed-off-by: Maciej Barć <xgqt@gentoo.org> ...guile-lzlib-0.0.2.ebuild => guile-lzlib-0.0.2-r1.ebuild} | 13 +++++++++++-- 1 file changed, 11 insertions(+), 2 deletions(-) https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=30fe460e5275811feac4ac68c024c1e4ba1cae54 commit 30fe460e5275811feac4ac68c024c1e4ba1cae54 Author: Maciej Barć <xgqt@gentoo.org> AuthorDate: 2023-05-16 11:43:57 +0000 Commit: Maciej Barć <xgqt@gentoo.org> CommitDate: 2023-05-16 11:50:43 +0000 dev-scheme/guile-zlib: do not strip guile bytecode Bug: https://bugs.gentoo.org/905898 Signed-off-by: Maciej Barć <xgqt@gentoo.org> .../{guile-zlib-0.1.0.ebuild => guile-zlib-0.1.0-r1.ebuild} | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4171bfcb004899aa0e96aad951f19a13f1d325c3 commit 4171bfcb004899aa0e96aad951f19a13f1d325c3 Author: Maciej Barć <xgqt@gentoo.org> AuthorDate: 2023-05-16 11:42:05 +0000 Commit: Maciej Barć <xgqt@gentoo.org> CommitDate: 2023-05-16 11:50:43 +0000 dev-scheme/guile-zstd: do not strip guile bytecode Bug: https://bugs.gentoo.org/905898 Signed-off-by: Maciej Barć <xgqt@gentoo.org> .../{guile-zstd-0.1.1.ebuild => guile-zstd-0.1.1-r1.ebuild} | 13 +++++++++++-- 1 file changed, 11 insertions(+), 2 deletions(-) https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7e3b8ea2dbbeffdb67ab6b029d2d7349e059d4e4 commit 7e3b8ea2dbbeffdb67ab6b029d2d7349e059d4e4 Author: Maciej Barć <xgqt@gentoo.org> AuthorDate: 2023-05-16 11:34:53 +0000 Commit: Maciej Barć <xgqt@gentoo.org> CommitDate: 2023-05-16 11:50:43 +0000 dev-scheme: use dostrip instead of RESTRICT Bug: https://bugs.gentoo.org/905898 Signed-off-by: Maciej Barć <xgqt@gentoo.org> dev-scheme/akku/akku-1.1.0.ebuild | 13 +++++++++++-- dev-scheme/bytestructures/bytestructures-1.0.10.ebuild | 12 +++++++++--- dev-scheme/bytestructures/bytestructures-2.0.1.ebuild | 11 +++++++++-- dev-scheme/fibers/fibers-1.2.0.ebuild | 7 +++++-- dev-scheme/guile-config/guile-config-0.5.1.ebuild | 11 +++++++++-- .../guile-dbd-postgresql-2.1.8.ebuild | 7 +++++-- .../guile-dbd-sqlite3/guile-dbd-sqlite3-2.1.8.ebuild | 7 +++++-- dev-scheme/guile-dbi/guile-dbi-2.1.8.ebuild | 7 +++++-- dev-scheme/guile-gcrypt/guile-gcrypt-0.3.0.ebuild | 12 +++++++++--- dev-scheme/guile-gcrypt/guile-gcrypt-0.4.0.ebuild | 12 +++++++++--- dev-scheme/guile-gi/guile-gi-0.3.1-r2.ebuild | 8 ++++++-- dev-scheme/guile-gi/guile-gi-0.3.2-r2.ebuild | 7 +++++-- dev-scheme/guile-gi/guile-gi-9999.ebuild | 7 +++++-- dev-scheme/guile-git/guile-git-0.5.2.ebuild | 12 ++++++++++-- dev-scheme/guile-gnutls/guile-gnutls-3.7.11-r1.ebuild | 5 ++++- dev-scheme/guile-hall/guile-hall-0.4.1.ebuild | 11 +++++++++-- dev-scheme/guile-json/guile-json-4.7.3.ebuild | 11 +++++++++-- dev-scheme/guile-lib/guile-lib-0.2.7.ebuild | 11 +++++++++-- dev-scheme/guile-libyaml/guile-libyaml-20211124.ebuild | 5 ++++- dev-scheme/guile-ncurses/guile-ncurses-3.0-r3.ebuild | 7 +++++-- dev-scheme/guile-ncurses/guile-ncurses-3.1.ebuild | 5 ++++- dev-scheme/guile-nyacc/guile-nyacc-1.06.7.ebuild | 7 +++++-- dev-scheme/guile-reader/guile-reader-0.6.3-r2.ebuild | 7 +++++-- dev-scheme/guile-sqlite3/guile-sqlite3-0.1.3.ebuild | 15 +++++++++++---- dev-scheme/guile-ssh/guile-ssh-0.16.0-r1.ebuild | 5 ++++- dev-scheme/guile-ssh/guile-ssh-0.16.2.ebuild | 5 ++++- dev-scheme/guile-ssh/guile-ssh-0.16.3.ebuild | 5 ++++- dev-scheme/skribilo/skribilo-0.10.0.ebuild | 6 +++++- dev-scheme/skribilo/skribilo-0.9.5.ebuild | 8 ++++++-- 29 files changed, 190 insertions(+), 56 deletions(-)
I also suggest applying strip workaround to dev-scheme/guile as well: without it guix builds fine, but fails at runtime. With the workaround it seems to work as expected. --- guile-3.0.9.ebuild 2023-02-08 23:28:23.373959421 +0000 +++ guile-3.0.9-r1.ebuild 2023-05-08 08:10:05.349714530 +0100 @@ -78,4 +82,8 @@ keepdir /usr/share/guile/site find "${ED}" -name '*.la' -delete || die + + # Workaround llvm-strip problem of mangling guile ELF debug + # sections: https://bugs.gentoo.org/905898 + dostrip -x "/usr/$(get_libdir)/guile" }
Sergei, 3.0.9 already restricts stripping...?
I re-tested on a fresh system and indeed dev-scheme/guile does not need any extra fixes. Individual packages were enough. Thank you!
Thanks a lot for reporting this Sergei, `dev-scheme/guile` should use the new `dostrip -x` approach in new versions. It would just be surprising if it had been broken...
