Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 898706 - dev-python/pandas-1.5.3 fails to compile (CYTHON3-SYSTEM): Cython.Compiler.Errors.CompileError: timedeltas.pyx
Summary: dev-python/pandas-1.5.3 fails to compile (CYTHON3-SYSTEM): Cython.Compiler.Er...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: cython3-tracker
  Show dependency tree
 
Reported: 2023-03-02 08:26 UTC by Agostino Sarubbo
Modified: 2024-02-28 12:50 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---

Attachments
build.log (build.log,56.73 KB, text/plain)
2023-03-02 08:26 UTC, Agostino Sarubbo 		Details
dev-python:pandas-1.5.2:20230829-183227.log (dev-python:pandas-1.5.2:20230829-183227.log,21.27 KB, text/plain)
2023-08-29 18:35 UTC, Maciej Barć 		Details
View All Add an attachment (proposed patch, testcase, etc.)

Note You need to log in before you can comment on or make changes to this bug.
Description Agostino Sarubbo gentoo-dev 2023-03-02 08:26:33 UTC 
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: dev-python/pandas-1.5.3 fails to compile (CYTHON3-SYSTEM).
Discovered on: amd64 (internal ref: hardened_tinderbox)

NOTE:
(CYTHON3-SYSTEM) in the summary means that the bug was found on a machine that runs dev-python/cython-3 but this bug MAY or MAY NOT BE related to the new version of cython
Comment 1 Agostino Sarubbo gentoo-dev 2023-03-02 08:26:35 UTC 
Created attachment 855556 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2023-03-02 08:26:36 UTC 
Error(s) that match a know pattern in addition to what has been reported in the summary:


Cython.Compiler.Errors.CompileError: pandas/_libs/tslibs/timedeltas.pyx
Cython.Compiler.Errors.CompileError: pandas/_libs/window/aggregations.pyx
Comment 3 Maciej Barć gentoo-dev 2023-08-29 18:34:09 UTC 
Can reproduce on a stable Gentoo system with PYTHON_TARGETS="python3_11".
Comment 4 Maciej Barć gentoo-dev 2023-08-29 18:35:42 UTC 
Created attachment 868999 [details]
dev-python:pandas-1.5.2:20230829-183227.log

dev-python:pandas-1.5.2:20230829-183227.log
Comment 5 Larry the Git Cow gentoo-dev 2023-09-13 05:52:50 UTC 
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=44505e939b78cbaa20fe34198a1b7210b9b05c56

commit 44505e939b78cbaa20fe34198a1b7210b9b05c56
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2023-09-13 05:48:56 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2023-09-13 05:50:49 +0000

    dev-python/pandas: depend on <cython-3 for older versions
    
    Bug: https://bugs.gentoo.org/898706
    Signed-off-by: Sam James <sam@gentoo.org>

 dev-python/pandas/pandas-1.5.1.ebuild    | 2 ++
 dev-python/pandas/pandas-1.5.2.ebuild    | 2 ++
 dev-python/pandas/pandas-1.5.3.ebuild    | 1 +
 dev-python/pandas/pandas-2.0.0.ebuild    | 2 ++
 dev-python/pandas/pandas-2.0.1.ebuild    | 2 ++
 dev-python/pandas/pandas-2.0.2.ebuild    | 2 ++
 dev-python/pandas/pandas-2.0.3-r1.ebuild | 2 ++
 7 files changed, 13 insertions(+)