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Bug 898672 - dev-python/h5py-3.8.0 fails to compile (CYTHON3-SYSTEM): Cython.Compiler.Errors.CompileError: _errors.pyx
Summary: dev-python/h5py-3.8.0 fails to compile (CYTHON3-SYSTEM): Cython.Compiler.Erro...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Python Gentoo Team
URL:
Whiteboard:
Keywords:
: 917575 (view as bug list)
Depends on:
Blocks: cython3-tracker
  Show dependency tree
 
Reported: 2023-03-02 08:22 UTC by Agostino Sarubbo
Modified: 2023-12-25 07:30 UTC (History)
5 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,93.67 KB, text/plain)
2023-03-02 08:22 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2023-03-02 08:22:47 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: dev-python/h5py-3.8.0 fails to compile (CYTHON3-SYSTEM).
Discovered on: amd64 (internal ref: hardened_tinderbox)

NOTE:
(CYTHON3-SYSTEM) in the summary means that the bug was found on a machine that runs dev-python/cython-3 but this bug MAY or MAY NOT BE related to the new version of cython
Comment 1 Agostino Sarubbo gentoo-dev 2023-03-02 08:22:50 UTC
Created attachment 855522 [details]
build.log

build log and emerge --info
Comment 2 Larry the Git Cow gentoo-dev 2023-05-11 06:26:40 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b9d3050d6c136f92f14f193310b57622dbb4c045

commit b9d3050d6c136f92f14f193310b57622dbb4c045
Author:     Michał Górny <mgorny@gentoo.org>
AuthorDate: 2023-05-11 05:52:14 +0000
Commit:     Michał Górny <mgorny@gentoo.org>
CommitDate: 2023-05-11 06:22:18 +0000

    dev-python/h5py: Backport cython-3 fix
    
    Closes: https://bugs.gentoo.org/898672
    Signed-off-by: Michał Górny <mgorny@gentoo.org>

 dev-python/h5py/files/h5py-3.8.0-cython3.patch | 26 ++++++++++++++++++++++++++
 dev-python/h5py/h5py-3.8.0.ebuild              |  4 ++++
 2 files changed, 30 insertions(+)
Comment 3 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2023-06-21 03:43:55 UTC
Unfortunately, this has now regressed due to further changes in Cython.
Comment 4 Erik Quaeghebeur 2023-10-31 12:09:22 UTC
(In reply to Michał Górny from comment #3)
> Unfortunately, this has now regressed due to further changes in Cython.
They now seem to have a patch that does appear to work: https://github.com/h5py/h5py/issues/2268#issuecomment-1748725067
Comment 5 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2023-11-19 08:05:07 UTC
*** Bug 917575 has been marked as a duplicate of this bug. ***
Comment 6 Eli Schwartz 2023-11-19 14:44:31 UTC
*** Bug 917575 has been marked as a duplicate of this bug. ***
Comment 7 Larry the Git Cow gentoo-dev 2023-12-05 13:41:38 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2fb8858d14adab839c66d7d2aa6ef5246dc8e4af

commit 2fb8858d14adab839c66d7d2aa6ef5246dc8e4af
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2023-12-05 13:28:02 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2023-12-05 13:40:55 +0000

    dev-python/h5py: backport cython-3 patch
    
    Closes: https://bugs.gentoo.org/898672
    Signed-off-by: Sam James <sam@gentoo.org>

 dev-python/h5py/Manifest              |  1 +
 dev-python/h5py/h5py-3.10.0-r1.ebuild | 66 +++++++++++++++++++++++++++++++++++
 2 files changed, 67 insertions(+)
Comment 8 Larry the Git Cow gentoo-dev 2023-12-25 07:30:04 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b82e7601264afc0a8755fc36ec41522a2df70612

commit b82e7601264afc0a8755fc36ec41522a2df70612
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2023-12-25 07:21:20 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2023-12-25 07:21:20 +0000

    dev-python/h5py: drop 3.10.0
    
    Bug: https://bugs.gentoo.org/898672
    Signed-off-by: Sam James <sam@gentoo.org>

 dev-python/h5py/h5py-3.10.0.ebuild | 70 --------------------------------------
 1 file changed, 70 deletions(-)