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Bug 894622 - sci-biology/seqan-3.1.0: The SDSL library is required, but wasn't found
Summary: sci-biology/seqan-3.1.0: The SDSL library is required, but wasn't found
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2023-02-15 18:30 UTC by Toralf Förster
Modified: 2023-08-29 12:11 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,18.09 KB, text/plain)
2023-02-15 18:30 UTC, Toralf Förster
Details
CMakeError.log (CMakeError.log,5.63 KB, text/plain)
2023-02-15 18:30 UTC, Toralf Förster
Details
CMakeOutput.log (CMakeOutput.log,28.10 KB, text/plain)
2023-02-15 18:30 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,94.30 KB, text/plain)
2023-02-15 18:30 UTC, Toralf Förster
Details
environment (environment,93.57 KB, text/plain)
2023-02-15 18:30 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,27.37 KB, application/x-bzip)
2023-02-15 18:30 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,5.48 KB, application/x-bzip)
2023-02-15 18:30 UTC, Toralf Förster
Details
sci-biology:seqan-3.1.0:20230215-081121.log (sci-biology:seqan-3.1.0:20230215-081121.log,4.37 KB, text/plain)
2023-02-15 18:30 UTC, Toralf Förster
Details
temp.tar.bz2 (temp.tar.bz2,23.47 KB, application/x-bzip)
2023-02-15 18:30 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2023-02-15 18:30:37 UTC
  https://github.com/xxsds/sdsl-lite
Call Stack (most recent call first):
  build_system/seqan3-config.cmake:379 (seqan3_config_error)
  CMakeLists.txt:29 (find_package)


-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build/CMakeFiles/CMakeOutput.log".
See also "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build/CMakeFiles/CMakeError.log".

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_systemd-j4-20230214-180043

  -------------------------------------------------------------------

GNUMAKEFLAGS="$GNUMAKEFLAGS --jobserver-style=pipe"
gcc-config -l:
 [1] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
/usr/lib/llvm/15
15.0.7
Python 3.10.10
Available Rust versions:
  [1]   rust-1.67.1 *
The following VMs are available for generation-2:
*)	Eclipse Temurin JDK 17.0.6_p10 [openjdk-bin-17]
2)	Eclipse Temurin JDK 8.362_p09 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-17  system-vm

php cli (if any):
  [1]   php7.4
  [2]   php8.2 *

  HEAD of ::gentoo
commit 1dadff5210287977554e4a44e4483d61f7588166
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Wed Feb 15 07:02:05 2023 +0000

    2023-02-15 07:02:04 UTC

emerge -qpvO sci-biology/seqan
[ebuild  N    ] sci-biology/seqan-3.1.0  CPU_FLAGS_X86="sse4_2"
Comment 1 Toralf Förster gentoo-dev 2023-02-15 18:30:38 UTC
Created attachment 851352 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2023-02-15 18:30:39 UTC
Created attachment 851354 [details]
CMakeError.log
Comment 3 Toralf Förster gentoo-dev 2023-02-15 18:30:41 UTC
Created attachment 851356 [details]
CMakeOutput.log
Comment 4 Toralf Förster gentoo-dev 2023-02-15 18:30:42 UTC
Created attachment 851358 [details]
emerge-history.txt
Comment 5 Toralf Förster gentoo-dev 2023-02-15 18:30:44 UTC
Created attachment 851360 [details]
environment
Comment 6 Toralf Förster gentoo-dev 2023-02-15 18:30:45 UTC
Created attachment 851362 [details]
etc.portage.tar.bz2
Comment 7 Toralf Förster gentoo-dev 2023-02-15 18:30:46 UTC
Created attachment 851364 [details]
logs.tar.bz2
Comment 8 Toralf Förster gentoo-dev 2023-02-15 18:30:47 UTC
Created attachment 851366 [details]
sci-biology:seqan-3.1.0:20230215-081121.log
Comment 9 Toralf Förster gentoo-dev 2023-02-15 18:30:48 UTC
Created attachment 851368 [details]
temp.tar.bz2