* Package: sci-biology/seqan-3.1.0:0 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 cpu_flags_x86_sse4_2 elibc_glibc kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking seqan3-3.1.0-Source.tar.xz to /var/tmp/portage/sci-biology/seqan-3.1.0/work >>> Source unpacked in /var/tmp/portage/sci-biology/seqan-3.1.0/work >>> Preparing source in /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source ... * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source" * Build directory (BUILD_DIR): "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build" * Hardcoded definition(s) removed in submodules/sdsl-lite/CMakeLists.txt: * set(CMAKE_BUILD_TYPE "Release") >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source ... * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source" * Build directory (BUILD_DIR): "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build" cmake -C /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build/gentoo_toolchain.cmake /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source loading initial cache file /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build/gentoo_common_config.cmake -- The CXX compiler identification is GNU 13.0.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Finding SeqAn3 and checking requirements: -- SeqAn3 include dir found: /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source/include -- Detected as running from a repository checkout… -- …adding submodule include: /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source/submodules/cereal/include -- …adding submodule include: /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source/submodules/range-v3/include -- …adding submodule include: /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source/submodules/sdsl-lite/include -- C++ Standard-17 support: builtin -- C++ Concepts support: via -std=c++20 -- C++ Filesystem header: -- C++ Filesystem library: builtin -- Thread support: builtin. -- Required dependency: Range-V3 found. CMake Error at build_system/seqan3-config.cmake:114 (message): The SDSL library is required, but wasn't found. Get it from https://github.com/xxsds/sdsl-lite Call Stack (most recent call first): build_system/seqan3-config.cmake:379 (seqan3_config_error) CMakeLists.txt:29 (find_package) -- Configuring incomplete, errors occurred! See also "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build/CMakeFiles/CMakeOutput.log". See also "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build/CMakeFiles/CMakeError.log". * ERROR: sci-biology/seqan-3.1.0::gentoo failed (configure phase): * cmake failed * * Call stack: * ebuild.sh, line 136: Called src_configure * environment, line 2174: Called cmake_src_configure * environment, line 1085: Called die * The specific snippet of code: * "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; * * If you need support, post the output of `emerge --info '=sci-biology/seqan-3.1.0::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/seqan-3.1.0::gentoo'`. * The complete build log is located at '/var/log/portage/sci-biology:seqan-3.1.0:20230215-081121.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/seqan-3.1.0/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/seqan-3.1.0/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build' * S: '/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source'