>>> Configuring source in /var/tmp/portage/sci-biology/velvet-1.2.10/work/velvet_1.2.10 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/velvet-1.2.10/work/velvet_1.2.10 ... make -j4 CC=x86_64-pc-linux-gnu-gcc 'CFLAGS=-pipe -march=native -fno-diagnostics-color -O2 -fPIC -fopenmp' 'OPT=-pipe -march=native -fno-diagnostics-color -O2 -fPIC -fopenmp' OPENMP=1 -j1 x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -fopenmp -fopenmp -pipe -march=native -fno-diagnostics-color -O2 -fPIC -fopenmp -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/readCoherentGraph.c -o obj/readCoherentGraph.o Assembler messages: Fatal error: can't create obj/readCoherentGraph.o: No such file or directory In file included from src/readCoherentGraph.c:25: src/graph.h:178:20: warning: inline function setShortReadMarkerOffset declared but never defined ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 23.0_systemd-j4-20230108-050029 ------------------------------------------------------------------- GNUMAKEFLAGS="$GNUMAKEFLAGS --shuffle" gcc-config -l: [1] x86_64-pc-linux-gnu-10 [2] x86_64-pc-linux-gnu-12 * clang/llvm (if any): clang version 15.0.6 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/15/bin Configuration file: /etc/clang/clang.cfg /usr/lib/llvm/15 15.0.6 Python 3.10.9 Available Ruby profiles: [1] ruby27 (with Rubygems) [2] ruby30 (with Rubygems) * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 11.0.17_p8 [openjdk-bin-11] *) Eclipse Temurin JDK 17.0.5_p8 [openjdk-bin-17] 3) Eclipse Temurin JDK 8.352_p08 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-11 [3] openjdk-bin-17 system-vm php cli (if any): HEAD of ::gentoo commit ccad9583a12a0a9330d76bd0a023143f3bc89fef Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Tue Jan 10 04:47:06 2023 +0000 2023-01-10 04:47:06 UTC emerge -qpvO sci-biology/velvet [ebuild N ] sci-biology/velvet-1.2.10 USE="openmp -doc"
Created attachment 848074 [details] emerge-info.txt
Created attachment 848076 [details] emerge-history.txt.bz2
Created attachment 848078 [details] environment
Created attachment 848080 [details] etc.clang.tar.bz2
Created attachment 848082 [details] etc.portage.tar.bz2
Created attachment 848084 [details] sci-biology:velvet-1.2.10:20230110-054002.log
Created attachment 848086 [details] temp.tar.bz2
*** This bug has been marked as a duplicate of bug 880981 ***
