* Package:    sci-biology/velvet-1.2.10:0
 * Repository: gentoo
 * Maintainer: sci-biology@gentoo.org
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux openmp userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking velvet_1.2.10.tgz to /var/tmp/portage/sci-biology/velvet-1.2.10/work
>>> Source unpacked in /var/tmp/portage/sci-biology/velvet-1.2.10/work
>>> Preparing source in /var/tmp/portage/sci-biology/velvet-1.2.10/work/velvet_1.2.10 ...
 * Upstream recommends using -O3 in CFLAGS

 * To adjust the MAXKMERLENGTH, CATEGORIES, BIGASSEMBLY, LONGSEQUENCES parameters
 * as described in the PDF manual, please set the variables by prepending VELVET_ in
 * front of it. For example VELVET_MAXKMERLENGTH, VELVET_CATEGORIES, ...
 * Set them either in your environment or in /etc/portage/make.conf, then re-emerge
 * the package. For example:
 *   VELVET_MAXKMERLENGTH=NN emerge [options] velvet
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/velvet-1.2.10/work/velvet_1.2.10 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/velvet-1.2.10/work/velvet_1.2.10 ...
make -j4 CC=x86_64-pc-linux-gnu-gcc 'CFLAGS=-pipe -march=native -fno-diagnostics-color -O2 -fPIC -fopenmp' 'OPT=-pipe -march=native -fno-diagnostics-color -O2 -fPIC -fopenmp' OPENMP=1 -j1 
x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -fopenmp -fopenmp -pipe -march=native -fno-diagnostics-color -O2 -fPIC -fopenmp -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/readCoherentGraph.c -o obj/readCoherentGraph.o 
Assembler messages:
Fatal error: can't create obj/readCoherentGraph.o: No such file or directory
In file included from src/readCoherentGraph.c:25:
src/graph.h:178:20: warning: inline function ‘setShortReadMarkerOffset’ declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function ‘getShortReadMarkerOffset’ declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function ‘setShortReadMarkerPosition’ declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function ‘getShortReadMarkerPosition’ declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/readCoherentGraph.c:557:1: fatal error: error writing to -: Broken pipe
  557 | }
      | ^
compilation terminated.
make: *** [Makefile:110: obj/readCoherentGraph.o] Error 1 shuffle=1674694162
 * ERROR: sci-biology/velvet-1.2.10::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/velvet-1.2.10::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/velvet-1.2.10::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:velvet-1.2.10:20230110-054002.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/velvet-1.2.10/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/velvet-1.2.10/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/velvet-1.2.10/work/velvet_1.2.10'
 * S: '/var/tmp/portage/sci-biology/velvet-1.2.10/work/velvet_1.2.10'