-- Installing: /var/tmp/portage/sci-chemistry/gromacs-2023_rc1/image/usr/share/man/man1/gmx-grompp.1 -- Installing: /var/tmp/portage/sci-chemistry/gromacs-2023_rc1/image/usr/share/man/man1/gmx-bar.1 -- Installing: /var/tmp/portage/sci-chemistry/gromacs-2023_rc1/image/usr/share/man/man1/gmx-help.1 -- Installing: /var/tmp/portage/sci-chemistry/gromacs-2023_rc1/image/usr/share/man/man1/gmx-distance.1 -- Installing: /var/tmp/portage/sci-chemistry/gromacs-2023_rc1/image/usr/share/man/man1/gmx-sasa.1 * ERROR: sci-chemistry/gromacs-2023_rc1::gentoo failed (install phase): * !!! newdoc: /var/tmp/portage/sci-chemistry/gromacs-2023_rc1/distdir/manual-2023_rc1.pdf does not exist * * If you need support, post the output of `emerge --info '=sci-chemistry/gromacs-2023_rc1::gentoo'`, ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop_gnome_systemd_merged_usr-j4-20221218-160004 ------------------------------------------------------------------- GNUMAKEFLAGS="$GNUMAKEFLAGS --jobserver-style=pipe" GNUMAKEFLAGS="$GNUMAKEFLAGS --shuffle" gcc-config -l: [1] x86_64-pc-linux-gnu-12 * clang/llvm (if any): clang version 15.0.6 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/15/bin Configuration file: /etc/clang/clang.cfg /usr/lib/llvm/15 15.0.6 Python 3.10.9 Available Rust versions: [1] rust-bin-1.66.0 * The following VMs are available for generation-2: *) Eclipse Temurin JRE 17.0.5_p8 [openjdk-jre-bin-17] 2) Eclipse Temurin JRE 8.352_p08 [openjdk-jre-bin-8] Available Java Virtual Machines: [1] openjdk-jre-bin-8 [2] openjdk-jre-bin-17 system-vm php cli (if any): [1] php8.2 * HEAD of ::gentoo commit 68bd2e4321ba8d1be072f06e536ecd896c5e79a6 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Tue Dec 20 21:32:11 2022 +0000 2022-12-20 21:32:11 UTC emerge -qpvO sci-chemistry/gromacs [ebuild R ] sci-chemistry/gromacs-2023_rc1 USE="custom-cflags doc fftw gmxapi gmxapi-legacy hwloc offensive openmp single-precision threads tng -blas -build-manual -clang% -clang-cuda% (-cuda) -double-precision -lapack -mkl -mpi -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_10 -python3_8 -python3_9 -python3_11"
Created attachment 844395 [details] emerge-info.txt
Created attachment 844397 [details] emerge-history.txt.bz2
Created attachment 844399 [details] environment
Created attachment 844401 [details] etc.clang.tar.bz2
Created attachment 844403 [details] etc.portage.tar.bz2
Created attachment 844405 [details] logs.tar.bz2
Created attachment 844407 [details] sci-chemistry:gromacs-2023_rc1:20221220-220856.log.bz2
Created attachment 844409 [details] temp.tar.bz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e8387da1f4d652ed6404a48d7dca5c4bae9f8e32 commit e8387da1f4d652ed6404a48d7dca5c4bae9f8e32 Author: Alexey Shvetsov <alexxy@gentoo.org> AuthorDate: 2022-12-22 16:53:15 +0000 Commit: Alexey Shvetsov <alexxy@gentoo.org> CommitDate: 2022-12-22 16:53:15 +0000 sci-chemistry/gromacs: Fix manual build Closes: https://bugs.gentoo.org/887611 Closes: https://bugs.gentoo.org/887683 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org> sci-chemistry/gromacs/gromacs-2023.9999.ebuild | 2 +- sci-chemistry/gromacs/gromacs-2023_rc1.ebuild | 2 +- sci-chemistry/gromacs/gromacs-9999.ebuild | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-)
