Created attachment 843835 [details] Build log Portage 3.0.41 (python 3.10.9-final-0, default/linux/amd64/17.1, gcc-12, glibc-2.36-r6, 6.1.0-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-6.1.0-gentoo-x86_64-Intel-R-_Core-TM-_i7-4700MQ_CPU_@_2.40GHz-with-glibc2.36 KiB Mem: 16250828 total, 9874728 free KiB Swap: 16777212 total, 16777212 free Timestamp of repository gentoo: Mon, 19 Dec 2022 14:15:01 +0000 Head commit of repository gentoo: 1df248184eeae4fa1c8b3557176b540069e91e97 Timestamp of repository guru: Mon, 19 Dec 2022 11:02:08 +0000 Head commit of repository guru: 5d6950084e0a02e64117d69658cc2e74d0470103 Head commit of repository librewolf: 237624eb6f60c604b4f4a552ba0e377fc16851bb Head commit of repository rockford-overlay: e54f58ad46f56e498f0b8623248871e3d8d314da Head commit of repository tlp: 4ba9fce0927a4bc87a4df54eb352a163a439810e sh bash 5.2_p15 ld GNU ld (Gentoo 2.39 p5) 2.39.0 distcc 3.4 x86_64-pc-linux-gnu [disabled] ccache version 4.7.4 [enabled] app-misc/pax-utils: 1.3.5::gentoo app-shells/bash: 5.2_p15::gentoo dev-java/java-config: 2.3.1::gentoo dev-lang/perl: 5.36.0-r1::gentoo dev-lang/python: 3.10.9::gentoo, 3.11.1::gentoo dev-lang/rust: 1.65.0::gentoo dev-util/ccache: 4.7.4::gentoo dev-util/cmake: 3.25.1::gentoo dev-util/meson: 0.64.1::gentoo sys-apps/baselayout: 2.9::gentoo sys-apps/openrc: 0.45.2-r2::gentoo sys-apps/sandbox: 2.29::gentoo sys-devel/autoconf: 2.13-r7::gentoo, 2.71-r5::gentoo sys-devel/automake: 1.16.5::gentoo sys-devel/binutils: 2.39-r4::gentoo sys-devel/binutils-config: 5.4.1::gentoo sys-devel/clang: 15.0.6::gentoo sys-devel/gcc: 12.2.1_p20221210::gentoo sys-devel/gcc-config: 2.8::gentoo sys-devel/libtool: 2.4.7-r1::gentoo sys-devel/lld: 15.0.6::gentoo sys-devel/llvm: 15.0.6::gentoo sys-devel/make: 4.4::gentoo sys-kernel/linux-headers: 6.1::gentoo (virtual/os-headers) sys-libs/glibc: 2.36-r6::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync11.us.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-max-age: 24 sync-rsync-extra-opts: sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes guru location: /var/db/repos/guru sync-type: git sync-uri: https://github.com/gentoo-mirror/guru.git masters: gentoo librewolf location: /var/db/repos/librewolf sync-type: git sync-uri: https://gitlab.com/librewolf-community/browser/gentoo.git masters: gentoo rockford-overlay location: /var/db/repos/rockford-overlay sync-type: git sync-uri: https://github.com/RockfordRoe/rockford-overlay.git masters: gentoo tlp location: /var/db/repos/tlp sync-type: git sync-uri: https://github.com/dywisor/tlp-portage masters: gentoo ACCEPT_KEYWORDS="amd64 ~amd64 ~x86" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=haswell" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.8/conf" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe -march=haswell" DISTDIR="/var/cache/distfiles" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-O2 -pipe -march=haswell" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live ccache config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=haswell" GENTOO_MIRRORS="http://mirrors.rit.edu/gentoo/ http://www.gtlib.gatech.edu/pub/gentoo https://mirrors.rit.edu/gentoo/" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LEX="flex" MAKEOPTS="-j9" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="X acl alsa amd64 av1 bluetooth bzip2 cli crypt cue cups cxx dbus dri egl elogind evdev exif ffmpeg flac fortran fuse gdbm gif gstreamer gtk gtk2 gtk3 gtk4 iconv icu introspection ipv6 iwd jack jpeg kde libglvnd libtirpc libusb libxml2 lv2 lzma matroska mp3 mtp multilib ncurses networkmanager nls nptl ogg openal opengl openh264 openmp openssl opus pam pcre pipewire png policykit polkit pulseaudio python qml qt qt5 readline samba sdl seccomp split-usr ssl static-libs svg test-rust theora tiff tk truetype udev udisks unicode upower usb v4l vaapi vala vorbis vpx vulkan wayland webp x264 x265 xattr zlib zstd" ABI_X86="64" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="luajit" LUA_TARGETS="luajit" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_10" PYTHON_TARGETS="python3_10" RUBY_TARGETS="ruby31" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS ================================================================= Package Settings ================================================================= dev-ruby/psych-5.0.1::gentoo was built with the following: USE="test -doc" ABI_X86="(64)" RUBY_TARGETS="ruby31 -ruby27 -ruby30"
Can confirm this also happens to me with ruby31.
Also breaks compilation of (at least): dev-ruby/bundler-2.4.1 dev-ruby/did_you_mean-1.6.3 net-libs/webkit-gtk-2.38.3-r500 net-libs/webkit-gtk-2.38.3
Downgrading to 4.0.6 seems to fix this issue as a workaround. Maybe flag =dev-ruby/psych-5.0.1?
Huh, is it using the system version of psych and mixing it at install-time?
(In reply to Sam James from comment #4) > Huh, is it using the system version of psych and mixing it at install-time? It seems so. I also had issues downgrading it with it throwing that error. I uninstalled it completely, and installed 4.0.6, and nothing gives me that error anymore.
I can't seem to reproduce this so we'll need to figure out what additional conditions are needed to reproduce it.
Someone hit this on the forums too at https://forums.gentoo.org/viewtopic-t-1162395.html. I think it's definitely related to bug 835405.
I have met a similar incident, with; =dev-lang/ruby-3.1.3 =dev-lang/ruby-3.2.1 =dev-ruby/psych-5.1.0 =dev-ruby/bundler-2.4.6 I found a workaround (but unknown reason) as follows; 1. make.conf : RUBY_TARGETS="ruby32" (only, without any other version) USE=-doc 2. and successfully emerged dev-lang/ruby-3.2.1 dev-ruby/bundler-2.4.6 dev-ruby/date-3.3.3 dev-ruby/debug-1.7.1 dev-ruby/did_you_mean-1.6.3 dev-ruby/forwardable-1.3.3 dev-ruby/json-2.6.3 dev-ruby/kpeg-1.3.3 dev-ruby/matrix-0.4.2 dev-ruby/minitest-5.18.0 dev-ruby/net-ftp-0.2.0 dev-ruby/net-imap-0.3.4 dev-ruby/net-pop-0.1.2 dev-ruby/net-protocol-0.2.1 dev-ruby/net-smtp-0.3.3 dev-ruby/power_assert-2.0.3 dev-ruby/prime-0.1.2-r1 dev-ruby/psych-5.1.0 dev-ruby/racc-1.6.2 dev-ruby/rake-13.0.6-r1 dev-ruby/rbs-3.0.4 dev-ruby/rdoc-6.5.0 dev-ruby/rexml-3.2.5-r1 dev-ruby/rss-0.2.9-r1 dev-ruby/rubygems-3.4.6 dev-ruby/singleton-0.1.1 dev-ruby/stringio-3.0.5 dev-ruby/test-unit-3.5.7 dev-ruby/time-0.2.1 dev-ruby/timeout-0.3.2 dev-ruby/typeprof-0.21.7 virtual/ruby-ssl-13 virtual/rubygems-18
(In reply to Sam James from comment #7) > Someone hit this on the forums too at > https://forums.gentoo.org/viewtopic-t-1162395.html. > > I think it's definitely related to bug 835405. I suspect this was fixed by https://bugs.gentoo.org/835405#c5.
I still get this with current ruby 3.1.4-r3, psych-5.1.0. It's not just re-emerging psych that's failing; even just using psych from ruby doesn't work. E.g., this small ruby script fails with the same error message: gem 'psych' require 'psych' Psych.safe_load('--- foo') After doing some digging into what's happening at runtime on my system, it seems the problem is that libruby31.so contains the visible symbol Init_psych_parser. This is part of the built-in psych 4.0.4 in ruby 3.1.4. The init function Init_psych of the extension module for psych-5.1.0 ends up calling the Init_psych_parser from libruby31 instead of the function Init_psych_parser from psych-5.1.0's psych.so. This mixing of symbols for psych 4.0.4 and psych 5.1.0 is clearly unintended and this means specifically the class Psych::Parser isn't initialized properly, which in turn causes this undefined method _native_parse. For comparison I've looked at the ruby:31 docker image. The libruby.so there doesn't have these conflicting symbols. As far as I can tell the difference is due to gentoo configuring ruby with --with-static-linked-ext when the static-libs USE flag is enabled (which it is on my system). Disabling static-libs for dev-lang/ruby works around the problem.
(In reply to Willem Jan Palenstijn from comment #10) > I still get this with current ruby 3.1.4-r3, psych-5.1.0. > > [...] Thank you for the analysis! See also bug 891367.
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=460c97b79bf0962e9da7e11c6bbda13bd8c91ddb commit 460c97b79bf0962e9da7e11c6bbda13bd8c91ddb Author: Sam James <sam@gentoo.org> AuthorDate: 2024-06-24 05:35:59 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2024-06-24 19:40:35 +0000 profiles/base: mask dev-lang/ruby[static-libs] It breaks gem installation in mysterious ways and people keep tripping over it. graaff indicates on the PR that we'd like to remove it entirely for ruby:3.4 given it'll bitrot if it's masked, but that this is a good option for now. Closes: https://bugs.gentoo.org/887223 Closes: https://bugs.gentoo.org/891367 Closes: https://bugs.gentoo.org/903891 Closes: https://bugs.gentoo.org/917139 Signed-off-by: Sam James <sam@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/37267 Signed-off-by: Sam James <sam@gentoo.org> profiles/base/package.use.mask | 5 +++++ 1 file changed, 5 insertions(+)
