* Please file a bug about this at https://bugs.gentoo.org/ * with the maintainer of the package. * * ERROR: sci-biology/hmmer-2.3.2-r5::gentoo failed: * install aborted due to severe warnings shown above * * Call stack: ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop_gnome_systemd-j4-20221119-142335 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-12 * clang/llvm (if any): /usr/lib/llvm/15 15.0.5 Python 3.10.8 Available Ruby profiles: (none found) Available Rust versions: [1] rust-bin-1.65.0 * The following VMs are available for generation-2: 1) OpenJDK 17.0.5_p8 [openjdk-17] *) Eclipse Temurin JDK 17.0.5_p8 [openjdk-bin-17] 3) Eclipse Temurin JDK 8.352_p08 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-17 [2] openjdk-bin-8 [3] openjdk-bin-17 system-vm The Glorious Glasgow Haskell Compilation System, version 9.0.2 php cli (if any): HEAD of ::gentoo commit 3c5108210c082529e63d5db2669c3aa20770425a Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Sun Nov 20 16:16:52 2022 +0000 2022-11-20 16:16:52 UTC emerge -qpvO sci-biology/hmmer [ebuild N ] sci-biology/hmmer-3.1_beta2-r1 USE="-gsl -mpi -test" CPU_FLAGS_X86="sse"
Created attachment 835107 [details] emerge-info.txt
Created attachment 835109 [details] emerge-history.txt
Created attachment 835111 [details] environment
Created attachment 835113 [details] etc.portage.tar.bz2
Created attachment 835115 [details] logs.tar.bz2
Created attachment 835117 [details] sci-biology:hmmer-2.3.2-r5:20221120-173030.log
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=41183c48ca86eaaee196abfb18b935f12836f75a commit 41183c48ca86eaaee196abfb18b935f12836f75a Author: David Seifert <soap@gentoo.org> AuthorDate: 2022-11-20 21:23:10 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2022-11-20 21:23:10 +0000 sci-biology/hmmer: expose XSI pthread_setconcurrency() prototypes Closes: https://bugs.gentoo.org/882279 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/hmmer/hmmer-2.3.2-r5.ebuild | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-)
