Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 873310 - sci-libs/htslib-1.15.1 fails tests (MUSL)
Summary: sci-libs/htslib-1.15.1 fails tests (MUSL)
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords: PullRequest
Depends on:
Blocks:
 
Reported: 2022-09-28 14:40 UTC by Agostino Sarubbo
Modified: 2023-02-19 15:44 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---

Attachments
build.log (build.log,78.08 KB, text/plain)
2022-09-28 14:40 UTC, Agostino Sarubbo 		Details
View All Add an attachment (proposed patch, testcase, etc.)

Note You need to log in before you can comment on or make changes to this bug.
Description Agostino Sarubbo gentoo-dev 2022-09-28 14:40:25 UTC 
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-libs/htslib-1.15.1 fails tests (MUSL).
Discovered on: amd64 (internal ref: tinderbox_musl)

NOTE:
This machine uses MUSL libc
Comment 1 Agostino Sarubbo gentoo-dev 2022-09-28 14:40:28 UTC 
Created attachment 814504 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2022-09-28 14:40:29 UTC 
Error(s) that match a know pattern:


Testing rans4x16 -r -o1 on ./dat/q4	./rans4x16.test: line 12:  7908 Segmentation fault      ./rans4x16pr -r -o$o $out/r4x16-nl $out/r4x16.comp 2>> $out/r4x16.stderr
Comment 3 Larry the Git Cow gentoo-dev 2023-02-19 15:44:30 UTC 
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d16051f7223082375cc255d34da4a12737092748

commit d16051f7223082375cc255d34da4a12737092748
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2023-02-19 15:44:21 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2023-02-19 15:44:21 +0000

    sci-libs/htslib: drop 1.15.1
    
    Closes: https://github.com/gentoo/gentoo/pull/29661
    Closes: https://bugs.gentoo.org/873310
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-libs/htslib/Manifest             |  1 -
 sci-libs/htslib/htslib-1.15.1.ebuild | 52 ------------------------------------
 2 files changed, 53 deletions(-)