A rebuild, triggered by the boost-1.18.0 upgrade fails today when cuda USE flag is enabled: -- Found CUDA Toolkit v11.7 -- The CUDA compiler identification is NVIDIA 11.7.64 -- Detecting CUDA compiler ABI info -- Detecting CUDA compiler ABI info - done -- Check for working CUDA compiler: /opt/cuda/bin/nvcc - skipped * ACCESS DENIED: open_wr: /dev/nvidiactl * ACCESS DENIED: open_wr: /dev/nvidiactl * ACCESS DENIED: open_wr: /dev/nvidiactl * ACCESS DENIED: open_wr: /dev/nvidiactl * ACCESS DENIED: open_wr: /dev/nvidiactl * ACCESS DENIED: open_wr: /dev/nvidiactl * ACCESS DENIED: open_wr: /dev/nvidiactl * ACCESS DENIED: open_wr: /dev/nvidiactl -- Detecting CUDA compile features -- Detecting CUDA compile features - done -- CMAKE_CUDA_ARCHITECTURES: 35;37;50;52;53;60;61;62;70;72;75;80;86;87 Reproducible: Always Steps to Reproduce: 1. emerge =boost-1.18.0 2. USE=cuda emerge ~pcl-1.12.1 3. Portage 3.0.36 (python 3.10.7-final-0, default/linux/amd64/17.1/systemd, gcc-11.3.1, glibc-2.35-r8, 5.19.8-gentoo-0 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-5.19.8-gentoo-0-x86_64-AMD_Ryzen_7_3800X_8-Core_Processor-with-glibc2.35 KiB Mem: 32822700 total, 17148084 free KiB Swap: 33554428 total, 32956248 free Head commit of repository guru: e9b5432c4460478e3fda14907a252325e6264d3c Timestamp of repository steam-overlay: Wed, 07 Sep 2022 08:26:00 +0000 Head commit of repository steam-overlay: 78208ca83614c4cc031ca8f8ec9b023a5c9c3b1e Head commit of repository qt: 943f1f45e69cee8a1c159244f91d822042f35b2d Head commit of repository science: 070f86d184cddd2d2fb02fe2f8930a29dba4ee7d Head commit of repository gentoo-git: 916c59b85e6e3c7dc6ca73c3868af70e552af4f1 Head commit of repository waebbl: 7886a666096237e29d5df7a2eab1fd91b9130c24 Timestamp of repository gentoo: Sat, 10 Sep 2022 08:42:38 +0000 Head commit of repository gentoo: b42138f5c986665c237813b8f07eed2ee05b829f sh bash 5.1_p16-r2 ld GNU ld (Gentoo 2.39 p4) 2.39.0 app-misc/pax-utils: 1.3.5::gentoo app-shells/bash: 5.1_p16-r2::gentoo dev-java/java-config: 2.3.1::gentoo dev-lang/perl: 5.36.0::gentoo dev-lang/python: 3.10.7::gentoo, 3.11.0_rc1_p2::gentoo dev-lang/rust: 1.62.1::gentoo dev-util/cmake: 3.24.1::gentoo dev-util/meson: 0.63.2::gentoo sys-apps/baselayout: 2.8-r2::gentoo sys-apps/sandbox: 2.29::gentoo sys-apps/systemd: 251.4::gentoo sys-devel/autoconf: 2.13-r2::gentoo, 2.71-r2::gentoo sys-devel/automake: 1.16.5::gentoo sys-devel/binutils: 2.39-r2::gentoo sys-devel/binutils-config: 5.4.1::gentoo sys-devel/clang: 13.0.1::gentoo, 14.0.6-r1::gentoo, 15.0.0::gentoo sys-devel/gcc: 11.3.1_p20220909::gentoo, 12.2.0::gentoo sys-devel/gcc-config: 2.5-r1::gentoo sys-devel/libtool: 2.4.7::gentoo sys-devel/lld: 15.0.0::gentoo sys-devel/llvm: 13.0.1::gentoo, 14.0.6-r2::gentoo, 15.0.0::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.19::gentoo (virtual/os-headers) sys-libs/glibc: 2.35-r8::gentoo sys-libs/libselinux: 3.4::gentoo Repositories: guru location: /mnt/data/code/github/portage-overlays/guru sync-type: git sync-uri: git@git.gentoo.org:repo/proj/guru.git masters: gentoo priority: -1000 steam-overlay location: /var/db/repos/steam-overlay sync-type: git sync-uri: https://github.com/gentoo-mirror/steam-overlay.git masters: gentoo qt location: /mnt/data/code/github/portage-overlays/qt sync-type: git sync-uri: https://github.com/gentoo-mirror/qt.git masters: gentoo priority: 60 science location: /mnt/data/code/github/portage-overlays/sci sync-type: git sync-uri: git://github.com/waebbl/sci.git masters: gentoo priority: 60 gentoo-git location: /mnt/data/code/github/portage-overlays/gentoo-git sync-type: git sync-uri: https://github.com/waebbl/gentoo.git masters: gentoo priority: 99 waebbl location: /mnt/data/code/github/portage-overlays/waebbl sync-type: git sync-uri: https://github.com/waebbl/waebbl-gentoo.git masters: gentoo priority: 99 gentoo location: /var/db/repos/gentoo sync-type: git sync-uri: https://github.com/gentoo-mirror/gentoo.git priority: 100 Installed sets: @3D, @Qt6, @admin-tools, @desktop, @dev-tools, @docs, @esteam, @fonts, @games, @net-tools, @science ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=znver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -march=znver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check" DISTDIR="/var/cache/distfiles" EMERGE_DEFAULT_OPTS="--complete-graph --keep-going --fail-clean --usepkg --buildpkg --buildpkg-exclude='x11-drivers/nvidia-drivers virtual/* acct-user/* acct-group/* app-eselect/* dev-util/nvidia-cuda-toolkit' --autounmask=n --binpkg-respect-use=y --binpkg-changed-deps=y" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe -march=znver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg buildpkg-live buildsyspkg cgroup clean-logs config-protect-if-modified distlocks downgrade-backup ebuild-locks fail-clean fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-elog split-log strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=znver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check" GENTOO_MIRRORS="https://ftp.fau.de/gentoo/ https://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ https://ftp.halifax.rwth-aachen.de/gentoo/" INSTALL_MASK="/usr/share/locale -/usr/share/locale/de* -/usr/share/locale/en*" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" MAKEOPTS="-j16" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="X acl alsa amd64 branding bzip2 cli crypt dbus dri egl emacs fortran gdbm gif gnome gtk-doc iconv ipv6 jpeg jpeg2k kde lcms libglvnd libinput libtirpc man multilib ncurses networkmanager nls nptl offensive ogg opengl openmp pam pcre pic png policykit pulseaudio python qml qt5 readline seccomp sound split-usr ssl svg systemd tga theora threads tiff udev unicode vorbis webp wifi x264 x265 xattr xpm zlib zstd" ABI_X86="64" ADA_TARGET="gnat_2020" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc multiboot qemu" INPUT_DEVICES="libinput wacom" KERNEL="linux" L10N="de de-DE en en-GB en-US" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver" LLVM_TARGETS="NVPTX WebAssembly" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_10" PYTHON_TARGETS="python3_10" RUBY_TARGETS="ruby31" STEAMGAMES="witcher2" USERLAND="GNU" VIDEO_CARDS="dummy fbdev nvidia vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS ================================================================= Package Settings ================================================================= sci-libs/pcl-1.12.1-r1::gentoo was built with the following: USE="cuda opengl openni2 pcap png qhull qt5 usb vtk -doc -openni -test -tutorials" ABI_X86="(64)" CPU_FLAGS_X86="sse" FEATURES="userpriv protect-owned multilib-strict sign parallel-fetch ipc-sandbox buildpkg-live downgrade-backup sandbox buildpkg usersandbox userfetch unmerge-logs xattr unmerge-orphans news binpkg-docompress sfperms split-elog binpkg-dostrip binpkg-logs ebuild-locks config-protect-if-modified buildsyspkg unknown-features-warn strict strict-keepdir distlocks preserve-libs usersync merge-sync split-log fixlafiles assume-digests clean-logs cgroup qa-unresolved-soname-deps network-sandbox fail-clean pid-sandbox"
Created attachment 804595 [details] pcl-1.12.1-r1:20220911-085538.log build log
@aballier: I'd like this to be solved. If it's ok for you, I provide a PR with a fix for this and some of the other open issues, esp. #853886, #738996, #849002
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=88d595aade44b6b1dcc26ce0329bb9b4e6ddb0d3 commit 88d595aade44b6b1dcc26ce0329bb9b4e6ddb0d3 Author: Bernd Waibel <waebbl-gentoo@posteo.net> AuthorDate: 2022-11-13 00:01:24 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2022-11-13 00:01:24 +0000 sci-libs/pcl: fix several issues - enable cuda sandbox to avoid sandbox violation, #869674 - patch the code for several installation directories to conform to FHS. This is just a hack and should be done using GNUInstallDirs and provided upstream to solve it properly, #853886 - add a dependency on virtual/latex-base to avoid an additional QA issue on latex not found, because the doxyfile uses LaTeX by default. Also depend on doxygen[dot] to avoid a cmake warning about missing doxygen component - change test related cmake option to new value to avoid undefined cmake variables, #738996 - depend on dev-python/sphinx_rtd_theme to properly build tutorial docs with USE=tutorials, #849002 - restrict test, because it needs the gtest sources to be provided, the package alone seems not be enough. - fix hardcoded path for cmake files to be installed into /usr/share/cmake/ Closes: https://bugs.gentoo.org/869674 Closes: https://bugs.gentoo.org/853886 Closes: https://bugs.gentoo.org/738996 Closes: https://bugs.gentoo.org/849002 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: David Seifert <soap@gentoo.org> ....12.1-allow-configuration-of-install-dirs.patch | 32 +++++++++++++++++++ ...ve-directory-of-the-installed-cmake-files.patch | 22 +++++++++++++ .../{pcl-1.12.1-r1.ebuild => pcl-1.12.1-r2.ebuild} | 36 ++++++++++++++++++---- 3 files changed, 84 insertions(+), 6 deletions(-)
