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Bug 869194 - games-simulation/singularity-1.00-r1:0 - file collision with app-containers/apptainer-1.0.3
Summary: games-simulation/singularity-1.00-r1:0 - file collision with app-containers/a...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Games
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2022-09-08 14:29 UTC by Toralf Förster
Modified: 2022-09-08 14:36 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,19.48 KB, text/plain)
2022-09-08 14:29 UTC, Toralf Förster
Details
emerge-history.txt.bz2 (emerge-history.txt.bz2,60.50 KB, application/x-bzip)
2022-09-08 14:29 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,24.16 KB, application/x-bzip)
2022-09-08 14:29 UTC, Toralf Förster
Details
games-simulation:singularity-1.00-r1:20220908-130125.log (games-simulation:singularity-1.00-r1:20220908-130125.log,113.19 KB, text/plain)
2022-09-08 14:29 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,6.41 KB, application/x-bzip)
2022-09-08 14:29 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2022-09-08 14:29:39 UTC
 * Press Ctrl-C to Stop
 * 
 * app-containers/apptainer-1.0.3:0::gentoo
 * 	/usr/bin/singularity
 * 
 * Package 'games-simulation/singularity-1.00-r1' NOT merged due to file

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop-j4-20220904-110005

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-12.2.1 *
clang/llvm (if any):
clang version 15.0.0
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/15/bin
/usr/lib/llvm/15
15.0.0
Python 3.10.7
Available Ruby profiles:
  (none found)
Available Rust versions:
  [1]   rust-bin-1.62.1 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 11.0.15_p10 [openjdk-bin-11]
*)	Eclipse Temurin JDK 17.0.3_p7 [openjdk-bin-17]
3)	Eclipse Temurin JDK 8.332_p09 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11 
  [3]   openjdk-bin-17  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.0.2
php cli (if any):
GNU Make 4.3

  HEAD of ::gentoo
commit 96892c8eb196dc595c123d5bf8f4edf1ef59e0e4
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Thu Sep 8 12:01:53 2022 +0000

    2022-09-08 12:01:53 UTC

emerge -qpvO games-simulation/singularity
[ebuild  N    ] games-simulation/singularity-1.00-r1  USE="-doc -test" PYTHON_SINGLE_TARGET="python3_10 -python3_8 -python3_9"
Comment 1 Toralf Förster gentoo-dev 2022-09-08 14:29:40 UTC
Created attachment 803977 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2022-09-08 14:29:41 UTC
Created attachment 803980 [details]
emerge-history.txt.bz2
Comment 3 Toralf Förster gentoo-dev 2022-09-08 14:29:42 UTC
Created attachment 803983 [details]
etc.portage.tar.bz2
Comment 4 Toralf Förster gentoo-dev 2022-09-08 14:29:43 UTC
Created attachment 803986 [details]
games-simulation:singularity-1.00-r1:20220908-130125.log
Comment 5 Toralf Förster gentoo-dev 2022-09-08 14:29:44 UTC
Created attachment 803989 [details]
logs.tar.bz2
Comment 6 Marek Szuba (RETIRED) archtester gentoo-dev 2022-09-08 14:32:43 UTC
Guess we'll just update the blocker, then.
Comment 7 Oliver Freyermuth 2022-09-08 14:35:09 UTC
Another alternative could be to add a USE flag "symlink", which skips installation of the "singularity" symlink for app-containers/apptainer. 

This could be interesting for users, too, who may want to test whether the compatibility symlink is still used by applications ;-).
Comment 8 Larry the Git Cow gentoo-dev 2022-09-08 14:36:13 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6e3fda5b378306fa7edec67eea2647aeb547c519

commit 6e3fda5b378306fa7edec67eea2647aeb547c519
Author:     Marek Szuba <marecki@gentoo.org>
AuthorDate: 2022-09-08 14:34:38 +0000
Commit:     Marek Szuba <marecki@gentoo.org>
CommitDate: 2022-09-08 14:36:09 +0000

    games-simulation/singularity: add blocker with app-containers/apptainer
    
    Current versions of Apptainer still install symlinks for backwards
    compatibility with sys-cluster/singularity.
    
    Closes: https://bugs.gentoo.org/869194
    Signed-off-by: Marek Szuba <marecki@gentoo.org>

 games-simulation/singularity/singularity-1.00-r1.ebuild | 1 +
 1 file changed, 1 insertion(+)