too long lines were shrinked: echo "-Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE" > cxxflags c++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scor /usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: genbank.o: warning: relocation against `_ZN5boost9iostreams4zlib19default_compressionE' in read-only section `.text._ZN5boost9iostreams23basic_gzip_decompressorISaIcEE11make_paramsEi[_ZN5boost9iostreams23basic_gzip_decom /usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: genbank.o: in function `boost::detail::sp_counted_impl_p<boost::iostreams::symmetric_filter<boost::iostreams::detail::zlib_decompressor_impl<std::allocator<char> >, std::allocator<char> >::impl>::dispose()': genbank.cc:(.text._ZN5boost6detail17sp_counted_impl_pINS_9iostreams16symmetric_filterINS2_6detail22zlib_decompressor_implISaIcEEES6_E4implEE7disposeEv[_ZN5boost6detail17sp_counted_impl_pINS_9iostreams16symmetric_filterINS2_6detail22zlib_decompressor_implISaIcEEES6_E4implEE7disposeEv]+0x20): undefine /usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: genbank.cc:(.text._ZN5boost6detail17sp_counted_impl_pINS_9iostreams16symmetric_filterINS2_6detail22zlib_decompressor_implISaIcEEES6_E4implEE7disposeEv[_ZN5boost6detail17sp_counted_impl_pINS_9iostreams16symmetric_filterIN /usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: genbank.o: in function `boost::iostreams::basic_gzip_decompressor<std::allocator<char> >::make_params(int)': ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_systemd-j4-20220806-120004 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-12.1.1 * clang/llvm (if any): clang version 14.0.6 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/14/bin /usr/lib/llvm/14 14.0.6 Python 3.10.6 Available Ruby profiles: (none found) Available Rust versions: [1] rust-bin-1.62.1 * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 11.0.15_p10 [openjdk-bin-11] *) Eclipse Temurin JDK 17.0.3_p7 [openjdk-bin-17] 3) Eclipse Temurin JDK 8.332_p09 [openjdk-bin-8] 4) Eclipse Temurin JRE 17.0.3_p7 [openjdk-jre-bin-17] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-11 [3] openjdk-bin-17 system-vm [4] openjdk-jre-bin-17 The Glorious Glasgow Haskell Compilation System, version 9.0.2 php cli: HEAD of ::gentoo commit e420c0896c42bd30e79ac2661291ca577d97c9da Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Wed Aug 10 02:16:56 2022 +0000 2022-08-10 02:16:56 UTC emerge -qpvO sci-biology/augustus [ebuild N ] sci-biology/augustus-3.4.0-r1 USE="-doc"
Created attachment 799095 [details] emerge-info.txt
Created attachment 799097 [details] emerge-history.txt.bz2
Created attachment 799099 [details] environment
Created attachment 799101 [details] etc.portage.tar.bz2
Created attachment 799103 [details] sci-biology:augustus-3.4.0-r1:20220810-032735.log
Created attachment 799105 [details] temp.tar.bz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=405d411472329b890d43b44367b7874514c30379 commit 405d411472329b890d43b44367b7874514c30379 Author: Sam James <sam@gentoo.org> AuthorDate: 2022-09-03 22:04:43 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2022-09-03 22:09:19 +0000 sci-biology/augustus: fix Boost dep Closes: https://bugs.gentoo.org/864773 Signed-off-by: Sam James <sam@gentoo.org> .../{augustus-3.4.0-r1.ebuild => augustus-3.4.0-r2.ebuild} | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-)
