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Bug 856406 - dev-perl/PDL-2.63.0 fails to compile (lto): minuit.f:3567:10: error: type of [-Werror=lto-type-mismatch]
Summary: dev-perl/PDL-2.63.0 fails to compile (lto): minuit.f:3567:10: error: type of ...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: lto
  Show dependency tree
 
Reported: 2022-07-04 15:05 UTC by Agostino Sarubbo
Modified: 2024-04-10 00:57 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,332.85 KB, text/plain)
2022-07-04 15:05 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2022-07-04 15:05:18 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: dev-perl/PDL-2.63.0 fails to compile (lto).
Discovered on: amd64 (internal ref: lto_tinderbox)

NOTE:
This machine uses lto with CFLAGS=-flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing
Comment 1 Agostino Sarubbo gentoo-dev 2022-07-04 15:05:21 UTC
Created attachment 790055 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2022-07-26 09:01:09 UTC
Here is a bit of explanation:

-Werror=lto-type-mismatch:
User to find possible runtime issues in packages. It likely means the package is unsafe to build & use with LTO.
For projects using the same identifier but with different types across different files, they must be fixed to be consistent across the codebase.

-Werror=odr:
Used to find possible runtime issues in packages. These bugs are a problem anyway but may be even worse when combined with LTO. C++ code must comply with the One Definition Rule (ODR) - see https://en.cppreference.com/w/cpp/language/definition#One_Definition_Rule.

-Werror=strict-aliasing:
Used to find possible runtime issues in packages. These bugs are a problem anyway but may be even worse when combined with LTO.

Workarounds:
- If upstream is friendly and still active, file a bug upstream. For emulators, codecs, games, or multimedia packages, it may be worth just applying a workaround instead, as upstreams sometimes aren't receptive to these bugs (VALID FOR ALL).
- Use the new 'filter-lto' from flag-o-matic.eclass as it's likely to be unsafe with LTO (VALID FOR lto-type-mismatch - odr).
- Fix it yourself if interested, of course (VALID FOR ALL).
- Append-flags -fno-strict-aliasing (VALID FOR strict-aliasing).
- Use memcpy() but a union is sometimes suitable too (VALID FOR strict-aliasing).
- -fstrict-aliasing is implied by -O2, so this must be addressed in some form (VALID FOR strict-aliasing).

See also: https://marc.info/?l=gentoo-dev&m=165639574126280&w=2
Comment 3 Larry the Git Cow gentoo-dev 2024-03-27 04:52:11 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=599e1dc43dd98ed10c46df2503493c712e74c2e6

commit 599e1dc43dd98ed10c46df2503493c712e74c2e6
Author:     Eli Schwartz <eschwartz93@gmail.com>
AuthorDate: 2024-03-27 04:01:44 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-03-27 04:49:46 +0000

    dev-perl/PDL: mark as LTO-unsafe
    
    Closes: https://bugs.gentoo.org/856406
    Signed-off-by: Eli Schwartz <eschwartz93@gmail.com>
    Signed-off-by: Sam James <sam@gentoo.org>

 dev-perl/PDL/PDL-2.63.0.ebuild | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)
Comment 4 Eli Schwartz gentoo-dev 2024-04-02 23:13:21 UTC
The upstream ticket is fixed, PDL appears to build cleanly with LTO from a git checkout.
Comment 5 Larry the Git Cow gentoo-dev 2024-04-10 00:57:30 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=95b7c07b2a05902b8002a4f7ab91034247fdb810

commit 95b7c07b2a05902b8002a4f7ab91034247fdb810
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2024-04-10 00:30:27 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-04-10 00:56:20 +0000

    dev-perl/PDL: add 2.87.0
    
    * Drop USE=threads. Tests fail to compile with USE=-threads with:
      ```
      Basic/SourceFilter/../../blib/arch/auto/PDL/Core/Core.so: undefined symbol: pdl_pthread_free at /usr/lib64/perl5/5.38/x86_64-linux/DynaLoader.pm line 206.
      ```
    
      and configure loudly warns too:
      ```
            pthread disabled in perldl.conf
    PDL will be built without POSIX thread support.
            ==> *NOTE*: PDL threads are unrelated to perl threads (usethreads=y)!
            ==> Enabling perl threads will not help!
      ```
    
      Just drop it. I don't see the value in it here. See net-misc/curl's
      bd4d42f83c774c36bf879a5b7ec89d373546743e for the general rationale in killing
      USE=threads.
    
    * Drop now-obsolete LTO filtering as it was fixed in the last release after
      Eli reported it upstream, yay!
    
    Bug: https://bugs.gentoo.org/856406
    Signed-off-by: Sam James <sam@gentoo.org>

 dev-perl/PDL/Manifest                       |   1 +
 dev-perl/PDL/PDL-2.87.0.ebuild              | 140 ++++++++++++++++++++++++++++
 dev-perl/PDL/files/PDL-2.87.0-fortran.patch |  26 ++++++
 3 files changed, 167 insertions(+)