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Bug 853901 - dev-python/numpy-1.26.4 fails to compile: f2c_z_lapack.c:29747:33: error: type of xerbla_64_ does not match original declaration [-Werror=lto-type-mismatch]
Summary: dev-python/numpy-1.26.4 fails to compile: f2c_z_lapack.c:29747:33: error: typ...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: lto
  Show dependency tree
 
Reported: 2022-06-23 16:08 UTC by Agostino Sarubbo
Modified: 2024-06-16 00:07 UTC (History)
4 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,354.97 KB, text/plain)
2022-06-23 16:08 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2022-06-23 16:08:12 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: dev-python/numpy-1.23.0 fails to compile.
Discovered on: amd64 (internal ref: tinderbox)

NOTE:
This machine uses lto with CFLAGS=-flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing
Comment 1 Agostino Sarubbo gentoo-dev 2022-06-23 16:08:15 UTC
Created attachment 787121 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2022-06-24 07:04:46 UTC
(In reply to Agostino Sarubbo from comment #0)
> Discovered on: amd64 (internal ref: tinderbox)

internal ref is: lto_tinderbox
Comment 3 Agostino Sarubbo gentoo-dev 2022-07-26 09:00:06 UTC
Here is a bit of explanation:

-Werror=lto-type-mismatch:
User to find possible runtime issues in packages. It likely means the package is unsafe to build & use with LTO.
For projects using the same identifier but with different types across different files, they must be fixed to be consistent across the codebase.

-Werror=odr:
Used to find possible runtime issues in packages. These bugs are a problem anyway but may be even worse when combined with LTO. C++ code must comply with the One Definition Rule (ODR) - see https://en.cppreference.com/w/cpp/language/definition#One_Definition_Rule.

-Werror=strict-aliasing:
Used to find possible runtime issues in packages. These bugs are a problem anyway but may be even worse when combined with LTO.

Workarounds:
- If upstream is friendly and still active, file a bug upstream. For emulators, codecs, games, or multimedia packages, it may be worth just applying a workaround instead, as upstreams sometimes aren't receptive to these bugs (VALID FOR ALL).
- Use the new 'filter-lto' from flag-o-matic.eclass as it's likely to be unsafe with LTO (VALID FOR lto-type-mismatch - odr).
- Fix it yourself if interested, of course (VALID FOR ALL).
- Append-flags -fno-strict-aliasing (VALID FOR strict-aliasing).
- Use memcpy() but a union is sometimes suitable too (VALID FOR strict-aliasing).
- -fstrict-aliasing is implied by -O2, so this must be addressed in some form (VALID FOR strict-aliasing).

See also: https://marc.info/?l=gentoo-dev&m=165639574126280&w=2
Comment 4 Agostino Sarubbo gentoo-dev 2022-09-09 13:02:04 UTC
lto_tinderbox has reproduced this issue with version 1.23.2 - Updating summary.
Comment 5 Agostino Sarubbo gentoo-dev 2024-02-24 07:48:29 UTC
lto_tinderbox has reproduced this issue with version 1.26.4 - Updating summary.
Comment 6 Larry the Git Cow gentoo-dev 2024-06-16 00:07:48 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7b005b8564d8f8fe41971bafdc9d2f88c009d720

commit 7b005b8564d8f8fe41971bafdc9d2f88c009d720
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2024-06-16 00:06:57 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-06-16 00:06:57 +0000

    dev-python/numpy: filter LTO, add bug references
    
    Closes: https://bugs.gentoo.org/853901
    Closes: https://bugs.gentoo.org/922457
    Signed-off-by: Sam James <sam@gentoo.org>

 dev-python/numpy/numpy-1.26.4.ebuild       | 3 +++
 dev-python/numpy/numpy-2.0.0_rc2-r1.ebuild | 3 +++
 2 files changed, 6 insertions(+)