too long lines were shrinked: [396/1147] /usr/bin/x86_64-gentoo-linux-musl-g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/var/tmp/portage/sci-chemistry/gromacs-2022_rc1-r1/work/gromacs-2022-rc1/src/include -I/var/tmp/portage/sci-chemistry/gromacs-2022_rc1-r1/work/gromacs-2022_rc1_float/src/includ FAILED: src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o /usr/bin/x86_64-gentoo-linux-musl-g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/var/tmp/portage/sci-chemistry/gromacs-2022_rc1-r1/work/gromacs-2022-rc1/src/include -I/var/tmp/portage/sci-chemistry/gromacs-2022_rc1-r1/work/gromacs-2022_rc1_float/src/include -I/var/tm In file included from /var/tmp/portage/sci-chemistry/gromacs-2022_rc1-r1/work/gromacs-2022-rc1/src/gromacs/ewald/pme_pp.cpp:50: /var/tmp/portage/sci-chemistry/gromacs-2022_rc1-r1/work/gromacs-2022-rc1/src/gromacs/ewald/pme_pp.h:87:31: error: 'int64_t' has not been declared 87 | int64_t step, | ^~~~~~~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.0_musl_hardened-j4-20220216-231639 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-gentoo-linux-musl-11.2.1 * clang/llvm (if any): clang version 13.0.1 Target: x86_64-gentoo-linux-musl Thread model: posix InstalledDir: /usr/lib/llvm/13/bin /usr/lib/llvm/13 13.0.1 Python 3.9.10 Available Ruby profiles: [1] ruby26 (with Rubygems) [2] ruby27 (with Rubygems) [3] ruby30 (with Rubygems) * php cli: HEAD of ::gentoo commit 895d9be451aba2afca396d3ac03d60da6a6f3b7b Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Fri Feb 18 08:21:55 2022 +0000 2022-02-18 08:21:54 UTC emerge -qpvO sci-chemistry/gromacs [ebuild N ] sci-chemistry/gromacs-2022_rc1-r1 USE="custom-cflags doc fftw gmxapi gmxapi-legacy hwloc offensive openmp single-precision threads tng -blas -build-manual -clang -clang-cuda (-cuda) -double-precision -lapack -mkl -mpi -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_9 -python3_8 -python3_10"
Created attachment 765359 [details] emerge-info.txt
Created attachment 765360 [details] emerge-history.txt
Created attachment 765361 [details] environment
Created attachment 765362 [details] etc.portage.tar.bz2
Created attachment 765363 [details] logs.tar.bz2
Created attachment 765364 [details] sci-chemistry:gromacs-2022_rc1-r1:20220218-090427.log.bz2
Created attachment 765365 [details] temp.tar.bz2
I'll check it with LXC
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e62617ffb1b60e2a916b7a92659df2606374d62a commit e62617ffb1b60e2a916b7a92659df2606374d62a Author: Alexey Shvetsov <alexxy@gentoo.org> AuthorDate: 2022-02-21 16:19:40 +0000 Commit: Alexey Shvetsov <alexxy@gentoo.org> CommitDate: 2022-02-21 16:20:00 +0000 sci-chemistry/gromacs: Fix musl build (missing int64_t) for 2022 Closes: https://bugs.gentoo.org/833599 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org> .../gromacs/files/gromacs-2022-musl-stdint.patch | 25 ++++++++++++++++++++++ ...22_rc1-r1.ebuild => gromacs-2022_rc1-r2.ebuild} | 2 ++ 2 files changed, 27 insertions(+)
