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Bug 833482 - sci-chemistry/ParmEd-3.4.3 fails tests: ModuleNotFoundError: No module named numpy - ModuleNotFoundError: No module named simtk
Summary: sci-chemistry/ParmEd-3.4.3 fails tests: ModuleNotFoundError: No module named ...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords: PMASKED
Depends on:
Blocks:
 
Reported: 2022-02-16 13:17 UTC by Agostino Sarubbo
Modified: 2025-04-03 16:19 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,150.03 KB, text/plain)
2022-02-16 13:17 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2022-02-16 13:17:37 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-chemistry/ParmEd-3.4.3 fails tests.
Discovered on: amd64 (internal ref: ci)

NOTE:
If you think this is a GCC-11 related issue, please block bug 732706.
Comment 1 Agostino Sarubbo gentoo-dev 2022-02-16 13:17:39 UTC
Created attachment 765260 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2022-02-16 13:17:40 UTC
Error(s) that match a know pattern in addition to what has been reported in the summary:


E   ModuleNotFoundError: No module named 'numpy'
E   ModuleNotFoundError: No module named 'simtk'
Comment 3 Larry the Git Cow gentoo-dev 2025-04-03 16:19:55 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=399d0df71e48065c5e92d18e9d8ae05da5b286e9

commit 399d0df71e48065c5e92d18e9d8ae05da5b286e9
Author:     Alexey Shvetsov <alexxy@gentoo.org>
AuthorDate: 2025-04-03 16:18:36 +0000
Commit:     Alexey Shvetsov <alexxy@gentoo.org>
CommitDate: 2025-04-03 16:19:46 +0000

    sci-chemistry/ParmEd: add 4.3.0, drop 3.4.3
    
    Closes: https://bugs.gentoo.org/833482
    Closes: https://bugs.gentoo.org/897196
    Closes: https://bugs.gentoo.org/910018
    Closes: https://bugs.gentoo.org/923273
    Closes: https://bugs.gentoo.org/929760
    Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>

 sci-chemistry/ParmEd/Manifest                      |   2 +-
 .../{ParmEd-3.4.3.ebuild => ParmEd-4.3.0.ebuild}   |  19 +-
 .../ParmEd/files/ParmEd-4.3.0-tests.patch          | 191 +++++++++++++++++++++
 3 files changed, 209 insertions(+), 3 deletions(-)