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Bug 832186 - sci-biology/augustus-3.4.0 fails tests
Summary: sci-biology/augustus-3.4.0 fails tests
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2022-01-28 08:54 UTC by Agostino Sarubbo
Modified: 2022-01-28 21:49 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,85.49 KB, text/plain)
2022-01-28 08:54 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2022-01-28 08:54:03 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/augustus-3.4.0 fails tests.
Discovered on: amd64 (internal ref: ci)

NOTE:
If you think this is a GCC-11 related issue, please block bug 732706.
Comment 1 Agostino Sarubbo gentoo-dev 2022-01-28 08:54:05 UTC
Created attachment 763779 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2022-01-28 08:54:06 UTC
Error(s) that match a know pattern:


AssertionError: 127 != 0 : Return code not 0! Error: /bin/sh: line 1: samtools: command not found
error /bin/sh: line 1: samtools: command not found
    testcase.assertEqual(rc, 0, f'Return code not 0! Error: {error}' )
Comment 3 Larry the Git Cow gentoo-dev 2022-01-28 21:49:18 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c974dd2172656250d7e432b3619652ea68b1e723

commit c974dd2172656250d7e432b3619652ea68b1e723
Author:     Andrew Ammerlaan <andrewammerlaan@gentoo.org>
AuthorDate: 2022-01-28 21:48:40 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan@gentoo.org>
CommitDate: 2022-01-28 21:49:14 +0000

    sci-biology/augustus: add forgotten runtime dependency
    
    Closes: https://bugs.gentoo.org/832186
    Package-Manager: Portage-3.0.30, Repoman-3.0.3
    Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

 sci-biology/augustus/{augustus-3.4.0.ebuild => augustus-3.4.0-r1.ebuild} | 1 +
 1 file changed, 1 insertion(+)