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Bug 803488 - dev-tex/pdfannotextractor-0.1l-r1 is not compatible with dev-java/{font,pdf}box-2.0.24
Summary: dev-tex/pdfannotextractor-0.1l-r1 is not compatible with dev-java/{font,pdf}b...
Status: RESOLVED CANTFIX
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: TeX project
URL:
Whiteboard:
Keywords: PullRequest
Depends on:
Blocks: 803542 824042
  Show dependency tree
 
Reported: 2021-07-23 08:26 UTC by Volkmar W. Pogatzki
Modified: 2021-11-23 17:25 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build log (build.log,21.34 KB, text/plain)
2021-07-23 08:26 UTC, Volkmar W. Pogatzki
Details

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Description Volkmar W. Pogatzki 2021-07-23 08:26:52 UTC
Created attachment 725968 [details]
build log

grep 'does not exist' /var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r2/temp/build.log 
    [javac] /var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r2/work/source/latex/pax/src/PDFAnnotExtractor.java:32: error: package org.apache.pdfbox.pdmodel.interactive.action.type does not exist
    [javac] /var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r2/work/source/latex/pax/src/StringVisitor.java:26: error: package org.apache.pdfbox.exceptions does not exist




dev-java/pdfbox-2.0.24 is is presently in https://github.com/gentoo/gentoo/pull/21564




!!! When you file a bug report, please include the following information:
GENTOO_VM=openjdk-11  CLASSPATH="" JAVA_HOME="/usr/lib64/openjdk-11"
JAVACFLAGS="-source 1.6 -target 1.6" COMPILER="javac"
and of course, the output of emerge --info =pdfannotextractor-0.1l



Portage 3.0.20 (python 3.10.0-beta-4, default/linux/amd64/17.1/desktop, gcc-10.3.0, glibc-2.33-r1, 4.19.198-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.19.198-gentoo-x86_64-Intel-R-_Core-TM-_i7-3740QM_CPU_@_2.70GHz-with-glibc2.33
KiB Mem:    16336148 total,   6953944 free
KiB Swap:   17577980 total,  17577616 free
Timestamp of repository gentoo: Fri, 23 Jul 2021 05:15:01 +0000
Head commit of repository gentoo: 426e4d05d54fddf097080ebc3f4981464cd7f21b
sh bash 5.1_p8
ld GNU ld (Gentoo 2.35.2 p1) 2.35.2
app-shells/bash:          5.1_p8::gentoo
dev-java/java-config:     2.3.1::gentoo
dev-lang/perl:            5.34.0::gentoo
dev-lang/python:          3.9.5_p2::gentoo, 3.10.0_beta4::gentoo
dev-lang/rust:            1.52.1::gentoo
dev-util/cmake:           3.18.5::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.7::gentoo
sys-apps/openrc:          0.42.1-r1::gentoo
sys-apps/sandbox:         2.24::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
sys-devel/automake:       1.16.3-r1::gentoo
sys-devel/binutils:       2.35.2::gentoo
sys-devel/gcc:            10.3.0-r2::gentoo
sys-devel/gcc-config:     2.4::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.10::gentoo (virtual/os-headers)
sys-libs/glibc:           2.33-r1::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage/
    priority: -1000
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts: 
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-jobs: 1

testing
    location: /var/db/repos/testing
    masters: gentoo

Installed sets: @thunderbird
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.8/conf"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/cache/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="https://ftp.halifax.rwth-aachen.de/gentoo/ https://mirror.eu.oneandone.net/linux/distributions/gentoo/gentoo/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j8"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alsa amd64 branding bzip2 cairo cdda cdr cli crypt cups dri dts dvd dvdr emboss encode exif flac fortran gdbm gif gpm gtk gui iconv icu ipv6 jpeg lcms libglvnd libtirpc mad mng mp3 mp4 mpeg multilib ncurses nptl ogg opengl openmp pango pcre pdf png policykit ppds qt5 readline sdl seccomp spell split-usr ssl startup-notification svg tcpd tiff truetype udev unicode upower usb vorbis wxwidgets x264 xattr xcb xml xv xvid zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx f16c mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_10" PYTHON_TARGETS="python3_9 python3_10" RUBY_TARGETS="ruby26" SANE_BACKENDS="genesys" USERLAND="GNU" VIDEO_CARDS="intel i965 nouveau" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS
Comment 1 Miroslav Šulc gentoo-dev 2021-11-16 12:12:28 UTC
please migrate the package to dev-java/pdfbox:0 or last-rite it
Comment 2 Nuno Silva 2021-11-17 08:38:31 UTC
Wrapper exceptions were dropped: COSVisitorException should probably be IOException now[1];
The [...].pdmodel.interactive.annotation.type package import can probably be removed when [...].pdmodel.interactive.annotation is being imported, see [2];

And then there are the changes in methods - are these documented somewhere? From a quick glance, getCOSObject might be a replacement for getCOSDictionary (in PDDocumentCatalog)[3]. But uses of getAllPages probably require some adaptation to rely on getPages? [4]

From the build log there are at least also the following, which I did not search for in the pdfbox repositories:
- findRotation, findMediaBox, findCropBox, getCOSDicitonary of PDPage
- getCOSArray of PDPageFit*Destination
- getHexString of COSString
- keyList of COSDictionary

Does anyone know if the authors upstream would be interested in updating the package to work with a newer version of pdfbox?
Has any other distribution already done the required modifications? Debian appears to have some patches to update the imports (as does Gentoo), but I don't think that's enough.

[1] https://github.com/apache/pdfbox/commit/01c6698a401ab976d37397fdf6ce5eeb90d7dd83
[2] https://github.com/apache/pdfbox/commit/ba57f0a294e90ab80e39a1e07cb1f6aa8e69e5ca
[3] https://github.com/apache/pdfbox/commit/9e77adf2fdde24cb9e180be8335e526e3d4bbaae
[4] https://svn.apache.org/viewvc/pdfbox/trunk/pdfbox/src/main/java/org/apache/pdfbox/pdmodel/PDDocumentCatalog.java?r1=1634252&r2=1634251&pathrev=1634252
Comment 3 Larry the Git Cow gentoo-dev 2021-11-23 17:03:46 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0ab57a0eeb810d8b645170496a191baaae00404b

commit 0ab57a0eeb810d8b645170496a191baaae00404b
Author:     Volkmar W. Pogatzki <gentoo@pogatzki.net>
AuthorDate: 2021-11-23 13:14:50 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2021-11-23 17:02:42 +0000

    package.use.mask: mask dev-tex/pdfannotextractor
    
    Bug: https://bugs.gentoo.org/803488
    
    Signed-off-by: Volkmar W. Pogatzki <gentoo@pogatzki.net>
    Closes: https://github.com/gentoo/gentoo/pull/23049
    Signed-off-by: Sam James <sam@gentoo.org>

 profiles/base/package.use.mask | 5 +++++
 profiles/package.mask          | 5 +++++
 2 files changed, 10 insertions(+)
Comment 4 Volkmar W. Pogatzki 2021-11-23 17:25:11 UTC
dev-tex/pdfannotextractor is now package.masked, closing