Encountered with Gentoo Prefix: $ emerge sci-libs/sundials ... * ERROR: sci-libs/sundials-5.7.0::gentoo failed: * Aborting due to QA concerns: there are files installed outside the prefix * * Call stack: * misc-functions.sh, line 601: Called install_qa_check * misc-functions.sh, line 132: Called source 'install_symlink_html_docs' * 05prefix, line 114: Called install_qa_check_prefix * 05prefix, line 27: Called die * The specific snippet of code: * die "Aborting due to QA concerns: there are files installed outside the prefix" Trying with -doc USE flag (in /etc/portage/package.use does not help) Here is the info output: Portage 3.0.20 (python 3.9.6-final-0, default/linux/amd64/17.1/no-multilib/prefix/kernel-3.2+, gcc-11.1.0, glibc-2.33-r1, 3.10.0-1160.31.1.el7.x86_64 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.10.0-1160.31.1.el7.x86_64-x86_64-Intel-R-_Xeon-R-_CPU_E5-2660_v3_@_2.60GHz-with-glibc2.33 KiB Mem: 527940320 total, 367695028 free KiB Swap: 16777212 total, 15702824 free Timestamp of repository gentoo: Thu, 08 Jul 2021 23:30:01 +0000 Head commit of repository gentoo: d5fdc71410a80bfb459dcb1a8b885b707be341db sh bash 5.1_p8 ld GNU ld (Gentoo 2.36.1 p3) 2.36.1 app-shells/bash: 5.1_p8::gentoo dev-lang/perl: 5.34.0::gentoo dev-lang/python: 3.9.6::gentoo dev-lang/rust: 1.53.0::gentoo dev-lang/rust-bin: 1.53.0::gentoo dev-util/cmake: 3.20.5::gentoo sys-apps/baselayout: 2.7-r3::gentoo sys-apps/sandbox: 2.24::gentoo sys-devel/autoconf: 2.69-r5::gentoo sys-devel/automake: 1.16.3-r1::gentoo sys-devel/binutils: 2.36.1-r1::gentoo sys-devel/gcc: 10.3.0-r2::gentoo, 11.1.0-r2::gentoo sys-devel/gcc-config: 2.4::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.12::gentoo (virtual/os-headers) sys-libs/glibc: 2.33-r1::gentoo Repositories: gentoo location: /data/keeling/a/sarabas/gentoo/var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-max-age: 24 sync-rsync-verify-jobs: 1 sync-rsync-extra-opts: sync-rsync-verify-metamanifest: no ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/data/keeling/a/sarabas/gentoo/etc /etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/data/keeling/a/sarabas/gentoo/etc/env.d /data/keeling/a/sarabas/gentoo/etc/gentoo-release /etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe -O2 -pipe" DISTDIR="/data/keeling/a/sarabas/gentoo/var/cache/distfiles" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sfperms strict unknown-features-warn unmerge-logs unmerge-orphans unprivileged" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j2" PKGDIR="/data/keeling/a/sarabas/gentoo/var/cache/binpkgs" PORTAGE_CONFIGROOT="/data/keeling/a/sarabas/gentoo/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/dev/shm" USE="acl amd64 bzip2 cli crypt dri fortran gdbm iconv ipv6 libglvnd libtirpc ncurses nls nptl openmp pcre prefix readline seccomp split-usr ssl tcpd unicode zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby26" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS HTH, Sylwester
You've left out the build.log and the bad files in the output :( Could you attach the build.log please?
Created attachment 724096 [details] last entry from var/log/portage/elog/summary.log Here it is (hope this is it)
(In reply to Sylwester Arabas from comment #2) > Created attachment 724096 [details] > last entry from var/log/portage/elog/summary.log > > Here it is (hope this is it) Hmm. It should've given you a few more messages at the end of the failure, including a path to something like /var/tmp/portage/sci-libs/sundials-5.7.0/temp/build.log?
Created attachment 724102 [details] build.log Sorry, I guess this will be the correct file
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=40e6e7d1871fcbd67e738eb577f58e87e6118cbe commit 40e6e7d1871fcbd67e738eb577f58e87e6118cbe Author: Sam James <sam@gentoo.org> AuthorDate: 2021-07-16 05:26:23 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2021-07-16 05:26:46 +0000 sci-libs/sundials: fix installation of examples on prefix Closes: https://bugs.gentoo.org/802369 Signed-off-by: Sam James <sam@gentoo.org> sci-libs/sundials/sundials-3.2.1.ebuild | 4 ++-- sci-libs/sundials/sundials-5.2.0.ebuild | 2 +- sci-libs/sundials/sundials-5.7.0.ebuild | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-)
(In reply to Sylwester Arabas from comment #4) > Created attachment 724102 [details] > build.log > > Sorry, I guess this will be the correct file Thanks! Let's hope this sorts you out.
Yes, it helped. Thank you!
