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Bug 796455 - sci-chemistry/gromacs-2021.2 sandbox violation after tex call
Summary: sci-chemistry/gromacs-2021.2 sandbox violation after tex call
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-06-17 09:09 UTC by Pacho Ramos
Modified: 2021-06-18 12:26 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log.xz (1.log.xz,104.09 KB, application/x-xz)
2021-06-17 09:09 UTC, Pacho Ramos
Details

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Description Pacho Ramos gentoo-dev 2021-06-17 09:09:36 UTC
Created attachment 716568 [details]
build.log.xz

I think it's caused by latex calls used to build the manual (maybe we should simply switch to the precompiled PDF to prevent these issues like bug 732402 too)

>>> Source compiled.
 * --------------------------- ACCESS VIOLATION SUMMARY ---------------------------
 * LOG FILE: "/var/tmp/portage/sci-chemistry/gromacs-2021.2/temp/sandbox.log"
 * 
VERSION 1.0
FORMAT: F - Function called
FORMAT: S - Access Status
FORMAT: P - Path as passed to function
FORMAT: A - Absolute Path (not canonical)
FORMAT: R - Canonical Path
FORMAT: C - Command Line

F: open_wr
S: deny
P: /proc/mtrr
A: /proc/mtrr
R: /proc/mtrr
C: /var/tmp/portage/sci-chemistry/gromacs-2021.2/work/gromacs-2021.2_float/bin/gmx -quiet help -export rst 

F: open_wr
S: deny
P: /proc/mtrr
A: /proc/mtrr
R: /proc/mtrr
C: /var/tmp/portage/sci-chemistry/gromacs-2021.2/work/gromacs-2021.2_double/bin/gmx_d -quiet help -export rst 

Adding addpredict for this (and also /dev/nvidiactl on nvidia setups) workaround the issue also
Comment 1 Alexey Shvetsov archtester gentoo-dev 2021-06-18 12:26:43 UTC
Should be fixed, since now it uses downloaded manual