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Bug 788652 - dev-python/scipy-1.6.2: fails 1 test on ppc64 (TestNoData.test_nodata)
Summary: dev-python/scipy-1.6.2: fails 1 test on ppc64 (TestNoData.test_nodata)
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal with 1 vote (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords: TESTFAILURE
Depends on:
Blocks:
 
Reported: 2021-05-06 22:32 UTC by Sam James
Modified: 2021-11-02 01:00 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log.bz2 (build.log.bz2,255.10 KB, application/x-bzip2)
2021-05-06 22:32 UTC, Sam James
Details
build.log.xz (ppc64, 1.6.3) (scipy-1.6.3:20211101-235549.log.xz,184.73 KB, application/x-xz)
2021-11-02 00:55 UTC, ernsteiswuerfel
Details
build.log.xz (ppc64, 1.7.1) (scipy-1.7.1:20211102-001813.log.xz,198.55 KB, application/x-xz)
2021-11-02 01:00 UTC, ernsteiswuerfel
Details

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Description Sam James archtester Gentoo Infrastructure gentoo-dev Security 2021-05-06 22:32:59 UTC
Created attachment 706428 [details]
build.log.bz2

=================================== FAILURES ===================================
____________________________ TestNoData.test_nodata ____________________________
scipy/io/arff/tests/test_arffread.py:112: in test_nodata
    assert_equal(data.dtype, expected_dtype)
E   AssertionError:
E   Items are not equal:
E    ACTUAL: dtype([('sepallength', '>f8'), ('sepalwidth', '>f8'), ('petallength', '>f8'), ('petalwidth', '>f8'), ('class', 'S15')])
E    DESIRED: dtype([('sepallength', '<f8'), ('sepalwidth', '<f8'), ('petallength', '<f8'), ('petalwidth', '<f8'), ('class', 'S15')])
        data       = array([],
      dtype=[('sepallength', '>f8'), ('sepalwidth', '>f8'), ('petallength', '>f8'), ('petalwidth', '>f8'), ('class', 'S15')])
        expected_dtype = dtype([('sepallength', '<f8'), ('sepalwidth', '<f8'), ('petallength', '<f8'), ('petalwidth', '<f8'), ('class', 'S15')])
        meta       = Dataset: iris
        sepallength's type is numeric
        sepalwidth's type is numeric
        petallength's type is numeric
        petalwidth's type is numeric
        class's type is nominal, range is ('Iris-setosa', 'Iris-versicolor', 'Iris-virginica')

        nodata_filename = '/var/tmp/portage/dev-python/scipy-1.6.2/work/scipy-1.6.2-python3_8/build/test/lib/scipy/io/arff/tests/data/nodata.arff'
        self       = <scipy.io.arff.tests.test_arffread.TestNoData object at 0x3f8e9fb7ae20>
=========================== short test summary info ============================
FAILED scipy/io/arff/tests/test_arffread.py::TestNoData::test_nodata - Assert...
= 1 failed, 30551 passed, 2064 skipped, 10989 deselected, 77 xfailed, 5 xpassed in 1463.87s (0:24:23) =
 * ERROR: dev-python/scipy-1.6.2::gentoo failed (test phase):
 *   Tests fail with python3.8

----
Portage 3.0.18 (python 3.9.4-final-0, default/linux/powerpc/ppc64/17.0/64bit-userland/desktop/gnome, gcc-10.2.0, glibc-2.32-r6, 5.4.72-gentoo ppc64)
=================================================================
System uname: Linux-5.4.72-gentoo-ppc64-POWER8_-architected-,_altivec_supported-with-glibc2.32
KiB Mem:    24699464 total,  14713048 free
KiB Swap:   25165820 total,  23860176 free
Timestamp of repository gentoo: Thu, 06 May 2021 21:52:22 +0000
sh bash 5.0_p18
ld GNU ld (Gentoo 2.34 p6) 2.34.0
app-shells/bash:          5.0_p18::gentoo
dev-java/java-config:     2.3.1::gentoo
dev-lang/perl:            5.30.3::gentoo
dev-lang/python:          3.8.9_p2::gentoo, 3.9.4_p1::gentoo
dev-lang/rust-bin:        1.51.0::gentoo
dev-util/cmake:           3.18.5::gentoo
sys-apps/baselayout:      2.7::gentoo
sys-apps/openrc:          0.42.1-r1::gentoo
sys-apps/sandbox:         2.22::gentoo
sys-devel/autoconf:       2.69-r5::gentoo
sys-devel/automake:       1.16.2-r1::gentoo
sys-devel/binutils:       2.34-r2::gentoo
sys-devel/gcc:            10.2.0-r5::gentoo
sys-devel/gcc-config:     2.4::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.10::gentoo (virtual/os-headers)
sys-libs/glibc:           2.32-r6::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts:
    sync-rsync-verify-jobs: 1

ACCEPT_KEYWORDS="ppc64"
ACCEPT_LICENSE="*"
CBUILD="powerpc64-unknown-linux-gnu"
CFLAGS="-O2 -pipe -frecord-gcc-switches -fdiagnostics-show-option"
CHOST="powerpc64-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -frecord-gcc-switches -fdiagnostics-show-option"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--nospinner --ask-enter-invalid --jobs=4 --load-average 10 --quiet-build --keep-going --with-bdeps=y --complete-graph --deep"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe -frecord-gcc-switches -fdiagnostics-show-option"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs cgroup config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox mount-sandbox multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -frecord-gcc-switches -fdiagnostics-show-option"
GENTOO_MIRRORS="https://gentoo.osuosl.org/"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0"
MAKEOPTS="-j12 -l10"
PKGDIR="/var/tmp/portage/ppc32"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl alsa berkdb big-endian bluetooth branding bzip2 cairo cdda cdr cli colord crypt cups dbus dri dts dvd dvdr eds elogind emboss encode evo exif flac fortran gdbm gif gnome gnome-keyring gnome-online-accounts gpm gstreamer gtk gui ibm iconv icu introspection ipv6 jpeg lcms libglvnd libnotify libsecret mad mng mp3 mp4 mpeg nautilus ncurses nls nptl ogg opengl openmp pam pango pcre pdf png polkit ppc64 ppds pulseaudio qt5 readline sdl seccomp spell split-usr ssl startup-notification svg sysprof tcpd tiff tracker truetype udev udisks unicode upower usb vorbis wayland wxwidgets x264 xattr xcb xml xv xvid zlib" ABI_PPC="64" ADA_TARGET="gnat_2018" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_8" PYTHON_TARGETS="python3_8 python3_9" RUBY_TARGETS="ruby26" USERLAND="GNU" VIDEO_CARDS="fbdev mga nv r128 radeon dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS
Comment 1 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2021-05-06 22:33:15 UTC
Not a regression - see bug 776949.
Comment 2 ernsteiswuerfel archtester 2021-11-02 00:55:51 UTC
Created attachment 747960 [details]
build.log.xz (ppc64, 1.6.3)

Same for 1.6.3.
Comment 3 ernsteiswuerfel archtester 2021-11-02 01:00:21 UTC
Created attachment 747963 [details]
build.log.xz (ppc64, 1.7.1)

Same for 1.7.1.