Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 787200 - sci-biology/bamtools-2.5.1 - /.../stl_tree.h: error: static assertion failed: comparison object must be invocable as const (maybe gcc-11 related)
Summary: sci-biology/bamtools-2.5.1 - /.../stl_tree.h: error: static assertion failed:...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: gcc-11
  Show dependency tree
 
Reported: 2021-04-30 19:10 UTC by Toralf Förster
Modified: 2021-06-20 20:04 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.21 KB, text/plain)
2021-04-30 19:10 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,298.26 KB, text/plain)
2021-04-30 19:10 UTC, Toralf Förster
Details
environment (environment,89.68 KB, text/plain)
2021-04-30 19:10 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,20.75 KB, application/x-bzip)
2021-04-30 19:10 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,3.89 KB, application/x-bzip)
2021-04-30 19:10 UTC, Toralf Förster
Details
sci-biology:bamtools-2.5.1:20210430-190733.log (sci-biology:bamtools-2.5.1:20210430-190733.log,26.35 KB, text/plain)
2021-04-30 19:10 UTC, Toralf Förster
Details
temp.tar.bz2 (temp.tar.bz2,24.69 KB, application/x-bzip)
2021-04-30 19:10 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2021-04-30 19:10:22 UTC
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_tree.h:770:15: note: ‘std::is_invocable_v<const BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByName>&, const BamTools::Internal::MergeItem&, const BamTools::Internal::MergeItem&>’ evaluates to false
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_tree.h: In instantiation of ‘static const _Key& std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_S_key(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_Const_Link_type) [with _Key = BamTools::Internal::MergeItem; _Val = BamTools::Internal::MergeItem; _KeyOfValue = std::_Identity<BamTools::Internal::MergeItem>; _Compare = BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByPosition>; _Alloc = std::allocator<BamTools::Internal::MergeItem>; std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_Const_Link_type = const std::_Rb_tree_node<BamTools::Internal::MergeItem>*]’:

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no-multilib-20210423-202814

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.3.1
 [2] x86_64-pc-linux-gnu-8.3.1
 [3] x86_64-pc-linux-gnu-11.1.0 *
clang version 12.0.0
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/12/bin
/usr/lib/llvm/12
12.0.0
Python 3.8.9
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby30 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.51.0 *
The Glorious Glasgow Haskell Compilation System, version 8.10.4
  [1]   php7.3 *
  [2]   php7.4
  [3]   php8.0

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Fri Apr 30 18:55:41 UTC 2021

emerge -qpvO sci-biology/bamtools
[ebuild  N    ] sci-biology/bamtools-2.5.1
Comment 1 Toralf Förster gentoo-dev 2021-04-30 19:10:23 UTC
Created attachment 704676 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2021-04-30 19:10:24 UTC
Created attachment 704679 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2021-04-30 19:10:26 UTC
Created attachment 704682 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2021-04-30 19:10:27 UTC
Created attachment 704685 [details]
etc.portage.tar.bz2
Comment 5 Toralf Förster gentoo-dev 2021-04-30 19:10:28 UTC
Created attachment 704688 [details]
logs.tar.bz2
Comment 6 Toralf Förster gentoo-dev 2021-04-30 19:10:30 UTC
Created attachment 704691 [details]
sci-biology:bamtools-2.5.1:20210430-190733.log
Comment 7 Toralf Förster gentoo-dev 2021-04-30 19:10:31 UTC
Created attachment 704694 [details]
temp.tar.bz2
Comment 8 Larry the Git Cow gentoo-dev 2021-06-20 20:04:08 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=92bb3cbc3bf6874aa00912882ef4fccc0d0c1223

commit 92bb3cbc3bf6874aa00912882ef4fccc0d0c1223
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2021-06-20 20:03:52 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2021-06-20 20:03:52 +0000

    sci-biology/bamtools: drop 2.5.1
    
    Closes: https://bugs.gentoo.org/787200
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/bamtools/Manifest              |  1 -
 sci-biology/bamtools/bamtools-2.5.1.ebuild | 33 ------------------------------
 2 files changed, 34 deletions(-)

Additionally, it has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=76c0d35a1a7694289c8bf7fb3ebc19a159546e86

commit 76c0d35a1a7694289c8bf7fb3ebc19a159546e86
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2021-06-20 20:03:49 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2021-06-20 20:03:49 +0000

    sci-biology/bamtools: add 2.5.2
    
    Bug: https://bugs.gentoo.org/787200
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/bamtools/Manifest              |  1 +
 sci-biology/bamtools/bamtools-2.5.2.ebuild | 33 ++++++++++++++++++++++++++++++
 2 files changed, 34 insertions(+)