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Bug 780396 - sci-biology/gatk-2.4 - * vcs-snapshot_src_unpack: Unnecessary usage detected
Summary: sci-biology/gatk-2.4 - * vcs-snapshot_src_unpack: Unnecessary usage detected
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords: PMASKED
Depends on:
Blocks:
 
Reported: 2021-04-05 16:26 UTC by Toralf Förster
Modified: 2021-05-04 22:30 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.02 KB, text/plain)
2021-04-05 16:26 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,262.73 KB, text/plain)
2021-04-05 16:26 UTC, Toralf Förster
Details
environment (environment,120.04 KB, text/plain)
2021-04-05 16:26 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,24.44 KB, application/x-bzip)
2021-04-05 16:26 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,1.40 KB, application/x-bzip)
2021-04-05 16:26 UTC, Toralf Förster
Details
sci-biology:gatk-2.4:20210405-161428.log (sci-biology:gatk-2.4:20210405-161428.log,1.65 KB, text/plain)
2021-04-05 16:26 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2021-04-05 16:26:39 UTC
 * ERROR: sci-biology/gatk-2.4::gentoo failed (unpack phase):
 *   vcs-snapshot_src_unpack: Unnecessary usage detected
 * 

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no-multilib-20210331-001544

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.3.1
 [2] x86_64-pc-linux-gnu-10.2.0 *
clang version 11.1.0
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/11/bin
/usr/lib/llvm/11
11.1.0
Python 3.8.9
Available Ruby profiles:
  (none found)
Available Rust versions:
  [1]   rust-bin-1.51.0
  [2]   rust-1.51.0 *
The following VMs are available for generation-2:
*)	AdoptOpenJDK 8.282_p08 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.10.4

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Mon Apr  5 15:50:10 UTC 2021

emerge -qpvO sci-biology/gatk
[ebuild  N    ] sci-biology/gatk-2.4
Comment 1 Toralf Förster gentoo-dev 2021-04-05 16:26:40 UTC
Created attachment 697749 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2021-04-05 16:26:42 UTC
Created attachment 697752 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2021-04-05 16:26:43 UTC
Created attachment 697755 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2021-04-05 16:26:45 UTC
Created attachment 697758 [details]
etc.portage.tar.bz2
Comment 5 Toralf Förster gentoo-dev 2021-04-05 16:26:46 UTC
Created attachment 697761 [details]
logs.tar.bz2
Comment 6 Toralf Förster gentoo-dev 2021-04-05 16:26:47 UTC
Created attachment 697764 [details]
sci-biology:gatk-2.4:20210405-161428.log
Comment 7 Larry the Git Cow gentoo-dev 2021-04-05 16:48:39 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=07bea2652d449ecfd5bae8ca97e28e66272d902d

commit 07bea2652d449ecfd5bae8ca97e28e66272d902d
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2021-04-05 16:48:21 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2021-04-05 16:48:21 +0000

    package.mask: last-rite sci-biology/gatk
    
    Bug: https://bugs.gentoo.org/418625
    Bug: https://bugs.gentoo.org/431644
    Bug: https://bugs.gentoo.org/515816
    Bug: https://bugs.gentoo.org/542940
    Bug: https://bugs.gentoo.org/574632
    Bug: https://bugs.gentoo.org/780396
    Signed-off-by: David Seifert <soap@gentoo.org>

 profiles/package.mask | 6 ++++++
 1 file changed, 6 insertions(+)
Comment 8 Larry the Git Cow gentoo-dev 2021-05-04 22:30:19 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=92cb6e9daf7c9865bfc003d4968b56501d5d00c6

commit 92cb6e9daf7c9865bfc003d4968b56501d5d00c6
Author:     Jakov Smolic <jakov.smolic@sartura.hr>
AuthorDate: 2021-05-04 21:57:13 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2021-05-04 22:29:36 +0000

    sci-biology/gatk: Remove last-rited pkg
    
    Closes: https://bugs.gentoo.org/780396
    Closes: https://bugs.gentoo.org/574632
    Closes: https://bugs.gentoo.org/542940
    Closes: https://bugs.gentoo.org/515816
    Closes: https://bugs.gentoo.org/431644
    Closes: https://bugs.gentoo.org/418625
    Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr>
    Closes: https://github.com/gentoo/gentoo/pull/20667
    Signed-off-by: Sam James <sam@gentoo.org>

 profiles/package.mask            |  6 ------
 sci-biology/gatk/Manifest        |  1 -
 sci-biology/gatk/gatk-2.4.ebuild | 32 --------------------------------
 sci-biology/gatk/metadata.xml    | 11 -----------
 4 files changed, 50 deletions(-)