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Bug 777840 - sci-libs/coinor-clp-1.17.6 - /.../ld: /.../libdmumps.so: undefined reference to dorgqr_
Summary: sci-libs/coinor-clp-1.17.6 - /.../ld: /.../libdmumps.so: undefined reference ...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-03-23 08:06 UTC by Toralf Förster
Modified: 2021-09-07 17:56 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
logs.tar.bz2 (logs.tar.bz2,9.84 KB, application/x-bzip)
2021-03-23 08:06 UTC, Toralf Förster
Details
sci-libs:coinor-clp-1.17.6:20210322-221525.log (sci-libs:coinor-clp-1.17.6:20210322-221525.log,48.94 KB, text/plain)
2021-03-23 08:06 UTC, Toralf Förster
Details
emerge-info.txt (emerge-info.txt,16.51 KB, text/plain)
2021-03-23 08:11 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,121.09 KB, text/plain)
2021-03-23 08:11 UTC, Toralf Förster
Details
environment (environment,54.36 KB, text/plain)
2021-03-23 08:11 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,33.10 KB, application/x-bzip)
2021-03-23 08:11 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,9.84 KB, application/x-bzip)
2021-03-23 08:11 UTC, Toralf Förster
Details
sci-libs:coinor-clp-1.17.6:20210322-221525.log (sci-libs:coinor-clp-1.17.6:20210322-221525.log,48.94 KB, text/plain)
2021-03-23 08:11 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2021-03-23 08:06:47 UTC
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/libdmumps.so: undefined reference to `dorgqr_'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/libzmumps.so: undefined reference to `zungqr_'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/libdmumps.so: undefined reference to `dormqr_'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/libcmumps.so: undefined reference to `cunmqr_'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_systemd-20210320-151517

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10.2.0 *
/usr/lib/llvm/11
11.1.0
Python 3.8.8
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby27 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.50.0 *
The following VMs are available for generation-2:
*)	AdoptOpenJDK 8.282_p08 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.10.4

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Mon Mar 22 20:06:02 UTC 2021

emerge -qpvO sci-libs/coinor-clp
[ebuild  N    ] sci-libs/coinor-clp-1.17.6  USE="metis mumps -doc -examples -glpk -sparse -static-libs -test"
Comment 1 Toralf Förster gentoo-dev 2021-03-23 08:06:48 UTC
Created attachment 693159 [details]
logs.tar.bz2
Comment 2 Toralf Förster gentoo-dev 2021-03-23 08:06:50 UTC
Created attachment 693162 [details]
sci-libs:coinor-clp-1.17.6:20210322-221525.log
Comment 3 Toralf Förster gentoo-dev 2021-03-23 08:11:24 UTC
appeared recently at the tinderbox image 17.1_systemd-20210320-151517
Comment 4 Toralf Förster gentoo-dev 2021-03-23 08:11:25 UTC
Created attachment 693165 [details]
emerge-info.txt
Comment 5 Toralf Förster gentoo-dev 2021-03-23 08:11:26 UTC
Created attachment 693168 [details]
emerge-history.txt
Comment 6 Toralf Förster gentoo-dev 2021-03-23 08:11:28 UTC
Created attachment 693171 [details]
environment
Comment 7 Toralf Förster gentoo-dev 2021-03-23 08:11:29 UTC
Created attachment 693174 [details]
etc.portage.tar.bz2
Comment 8 Toralf Förster gentoo-dev 2021-03-23 08:11:30 UTC
Created attachment 693177 [details]
logs.tar.bz2
Comment 9 Toralf Förster gentoo-dev 2021-03-23 08:11:32 UTC
Created attachment 693180 [details]
sci-libs:coinor-clp-1.17.6:20210322-221525.log
Comment 10 Agostino Sarubbo gentoo-dev 2021-03-23 08:17:14 UTC

*** This bug has been marked as a duplicate of bug 703598 ***
Comment 11 Michael Orlitzky gentoo-dev 2021-03-23 12:25:49 UTC
Hm, we should keep one of these open. This bug fulfils the "test request" in the other one, so I'll reopen this one for the newer package.
Comment 12 Alessandro Barbieri 2021-09-06 22:37:33 UTC
it's mumps that's severely underlinked
Comment 13 Larry the Git Cow gentoo-dev 2021-09-07 17:56:41 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c6902b80403a506ebe337818c849f7d468294927

commit c6902b80403a506ebe337818c849f7d468294927
Author:     Michael Orlitzky <mjo@gentoo.org>
AuthorDate: 2021-09-07 17:53:50 +0000
Commit:     Michael Orlitzky <mjo@gentoo.org>
CommitDate: 2021-09-07 17:54:41 +0000

    sci-libs/mumps: new revision to fix more underlinking.
    
    When building without USE=mpi, the various lib*mumps libraries use
    LAPACK symbols without actually linking to liblapack. There are
    already a bunch of hacks in the mumps ebuild to work around these
    issues, so all I've done is add one more. As a simple test case,
    you can try to run the test suite for sci-libs/coinor-clp with
    USE="mumps metis", which now works.
    
    Closes: https://bugs.gentoo.org/777840
    Package-Manager: Portage-3.0.20, Repoman-3.0.3
    Signed-off-by: Michael Orlitzky <mjo@gentoo.org>

 sci-libs/mumps/{mumps-5.3.5.ebuild => mumps-5.3.5-r1.ebuild} | 4 ++++
 1 file changed, 4 insertions(+)