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Bug 776319 - sci-libs/votca-tools-2021 - /.../ld: /.../libmkl_intel_thread.so: undefined reference to mkl_sparse_d_csr_g_n_syrkd_f_ker_i4
Summary: sci-libs/votca-tools-2021 - /.../ld: /.../libmkl_intel_thread.so: undefined r...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Christoph Junghans (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-03-15 08:02 UTC by Toralf Förster
Modified: 2021-03-15 15:06 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.80 KB, text/plain)
2021-03-15 08:02 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,335.19 KB, text/plain)
2021-03-15 08:02 UTC, Toralf Förster
Details
environment (environment,89.17 KB, text/plain)
2021-03-15 08:02 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,95.07 KB, application/x-bzip)
2021-03-15 08:02 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,5.39 KB, application/x-bzip)
2021-03-15 08:02 UTC, Toralf Förster
Details
sci-libs:votca-tools-2021:20210314-221417.log.bz2 (sci-libs:votca-tools-2021:20210314-221417.log.bz2,42.19 KB, application/x-bzip)
2021-03-15 08:02 UTC, Toralf Förster
Details
temp.tar.bz2 (temp.tar.bz2,64.00 KB, application/x-bzip)
2021-03-15 08:02 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2021-03-15 08:02:05 UTC
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/libmkl_intel_thread.so: undefined reference to `mkl_sparse_d_csr__g_n_syrkd_f_ker_i4'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/libmkl_intel_thread.so: undefined reference to `mkl_sparse_c_dense_u_sv8x8_i8'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/libmkl_intel_thread.so: undefined reference to `mkl_cpds_lp64_sp_cpds_slv_bwd_update_nrhs_real'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/libmkl_intel_thread.so: undefined reference to `mkl_graph_merge_any_def_i64_i64_i32'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no-multilib_hardened-20210307-142948

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.3.1
 [2] x86_64-pc-linux-gnu-10.2.0 *
clang version 11.1.0
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/11/bin
/usr/lib/llvm/11
11.1.0
Python 3.8.8
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby27 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.50.0 *
The following VMs are available for generation-2:
*)	AdoptOpenJDK 8.282_p08 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.8.4

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Sun Mar 14 21:06:15 UTC 2021

emerge -qpvO sci-libs/votca-tools
[ebuild  N    ] sci-libs/votca-tools-2021
Comment 1 Toralf Förster gentoo-dev 2021-03-15 08:02:06 UTC
Created attachment 691533 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2021-03-15 08:02:08 UTC
Created attachment 691536 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2021-03-15 08:02:09 UTC
Created attachment 691539 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2021-03-15 08:02:11 UTC
Created attachment 691542 [details]
etc.portage.tar.bz2
Comment 5 Toralf Förster gentoo-dev 2021-03-15 08:02:12 UTC
Created attachment 691545 [details]
logs.tar.bz2
Comment 6 Toralf Förster gentoo-dev 2021-03-15 08:02:13 UTC
Created attachment 691548 [details]
sci-libs:votca-tools-2021:20210314-221417.log.bz2
Comment 7 Toralf Förster gentoo-dev 2021-03-15 08:02:14 UTC
Created attachment 691551 [details]
temp.tar.bz2
Comment 8 Larry the Git Cow gentoo-dev 2021-03-15 15:06:55 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0f9d9ac8b60635d7bb849795408bf6eca5e69d83

commit 0f9d9ac8b60635d7bb849795408bf6eca5e69d83
Author:     Christoph Junghans <junghans@gentoo.org>
AuthorDate: 2021-03-15 15:06:27 +0000
Commit:     Christoph Junghans <junghans@gentoo.org>
CommitDate: 2021-03-15 15:06:48 +0000

    sci-libs/votca-tools: disable mkl (bug #776319)
    
    Closes: https://bugs.gentoo.org/776319
    Package-Manager: Portage-3.0.13, Repoman-3.0.2
    Signed-off-by: Christoph Junghans <junghans@gentoo.org>

 sci-libs/votca-tools/votca-tools-2021.ebuild | 1 +
 1 file changed, 1 insertion(+)