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Bug 774000 - sci-libs/coinor-os-2.10.1 - /.../ld: /.../libCouenne.so: undefined reference to dsyev_
Summary: sci-libs/coinor-os-2.10.1 - /.../ld: /.../libCouenne.so: undefined reference ...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords: PullRequest
Depends on:
Blocks:
 
Reported: 2021-03-02 16:52 UTC by Toralf Förster
Modified: 2021-03-03 16:48 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.30 KB, text/plain)
2021-03-02 16:52 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,371.96 KB, text/plain)
2021-03-02 16:52 UTC, Toralf Förster
Details
environment (environment,94.48 KB, text/plain)
2021-03-02 16:52 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,27.10 KB, application/x-bzip)
2021-03-02 16:52 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,12.78 KB, application/x-bzip)
2021-03-02 16:52 UTC, Toralf Förster
Details
sci-libs:coinor-os-2.10.1:20210302-150714.log (sci-libs:coinor-os-2.10.1:20210302-150714.log,105.90 KB, text/plain)
2021-03-02 16:53 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2021-03-02 16:52:52 UTC
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fno-diagnostics-color -falign-functions=32:25:16 -DOS_BUILD -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/OSSolverService OSSolverService.o  ./.libs/libOS.so -L/usr/lib64 -lBcp -lCouenne -lbonmin /usr/lib64/libCbcSolver.so /usr/lib64/libCbc.so -lOsiSym -lSym /usr/lib64/libCgl.so /usr/lib64/libOsiVol.so /usr/lib64/libVol.so /usr/lib64/libOsiDylp.so /usr/lib64/libDylp.so /usr/lib64/libOsiClp.so /usr/lib64/libClpSolver.so /usr/lib64/libClp.so /usr/lib64/libOsi.so /usr/lib64/libipopt.so -lblas -ldl -lcppad_lib /usr/lib64/libCoinUtils.so -lbz2 -lz -lglpk -lm
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libCouenne.so: undefined reference to `dsyev_'
collect2: error: ld returned 1 exit status
make[3]: *** [Makefile:642: OSSolverService] Error 1
make[3]: Leaving directory '/var/tmp/portage/sci-libs/coinor-os-2.10.1/work/OS-2.10.1/OS/src'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma-20210221-154750

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.3.1
 [2] x86_64-pc-linux-gnu-10.2.0 *
/usr/lib/llvm/11
11.1.0
Python 3.8.8
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby27 (with Rubygems)
  [3]   ruby30 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.50.0
  [2]   rust-1.50.0 *
The following VMs are available for generation-2:
1)	JamVM JDK 2.0.0 [jamvm]
*)	AdoptOpenJDK 8.282_p08 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   jamvm 
  [2]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.8.4

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Tue Mar  2 14:37:12 UTC 2021

emerge -qpvO sci-libs/coinor-os
[ebuild  N    ] sci-libs/coinor-os-2.10.1  USE="-doc -examples -static-libs -test"
Comment 1 Toralf Förster gentoo-dev 2021-03-02 16:52:53 UTC
Created attachment 689085 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2021-03-02 16:52:55 UTC
Created attachment 689088 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2021-03-02 16:52:57 UTC
Created attachment 689091 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2021-03-02 16:52:58 UTC
Created attachment 689094 [details]
etc.portage.tar.bz2
Comment 5 Toralf Förster gentoo-dev 2021-03-02 16:52:59 UTC
Created attachment 689097 [details]
logs.tar.bz2
Comment 6 Toralf Förster gentoo-dev 2021-03-02 16:53:01 UTC
Created attachment 689100 [details]
sci-libs:coinor-os-2.10.1:20210302-150714.log
Comment 7 Ionen Wolkens gentoo-dev 2021-03-02 17:16:19 UTC
I'll have a look at this, seems couenne use lapack but doesn't link with it.
Comment 8 Ionen Wolkens gentoo-dev 2021-03-02 17:42:11 UTC
(In reply to Ionen Wolkens from comment #7)
> I'll have a look at this, seems couenne use lapack but doesn't link with it.
Or looking closer at how it uses it, it needs ipopt[lapack]
Comment 9 Larry the Git Cow gentoo-dev 2021-03-03 16:48:05 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=184efada26c7563834206043ebd77bff9fdfa4af

commit 184efada26c7563834206043ebd77bff9fdfa4af
Author:     Ionen Wolkens <sudinave@gmail.com>
AuthorDate: 2021-03-02 17:55:50 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2021-03-03 16:44:39 +0000

    sci-libs/coinor-couenne: add missing ipopt[lapack] USE dep
    
    Closes: https://bugs.gentoo.org/774000
    Package-Manager: Portage-3.0.16, Repoman-3.0.2
    Signed-off-by: Ionen Wolkens <sudinave@gmail.com>
    Closes: https://github.com/gentoo/gentoo/pull/19740
    Signed-off-by: Sam James <sam@gentoo.org>

 .../{coinor-couenne-0.5.8.ebuild => coinor-couenne-0.5.8-r1.ebuild}     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)