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Bug 765811 - sci-libs/avogadrolibs-1.93.0 fails to compile
Summary: sci-libs/avogadrolibs-1.93.0 fails to compile
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Chemistry-Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-01-17 20:59 UTC by Agostino Sarubbo
Modified: 2022-03-01 12:12 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,66.10 KB, text/plain)
2021-01-17 20:59 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2021-01-17 20:59:25 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-libs/avogadrolibs-1.93.0 fails to compile.
Discovered on: amd64 (internal ref: ci)
Comment 1 Agostino Sarubbo gentoo-dev 2021-01-17 20:59:28 UTC
Created attachment 683416 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2021-01-17 20:59:29 UTC
Possible context of error(s):

spacegrouptest.cpp:(.text+0x566): undefined reference to `Avogadro::Core::AvoSpglib::getHallNumber(Avogadro::Core::Molecule const&, double)'
spacegrouptest.cpp:(.text+0x1f60): undefined reference to `Avogadro::Core::AvoSpglib::reduceToPrimitive(Avogadro::Core::Molecule&, double)'
spacegrouptest.cpp:(.text+0x3540): undefined reference to `Avogadro::Core::AvoSpglib::conventionalizeCell(Avogadro::Core::Molecule&, double)'
spacegrouptest.cpp:(.text+0x3ae2): undefined reference to `Avogadro::Core::AvoSpglib::getHallNumber(Avogadro::Core::Molecule const&, double)'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: spacegrouptest.cpp:(.text+0x3e29): undefined reference to `Avogadro::Core::AvoSpglib::getHallNumber(Avogadro::Core::Molecule const&, double)'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: spacegrouptest.cpp:(.text+0x468d): undefined reference to `Avogadro::Core::AvoSpglib::getHallNumber(Avogadro::Core::Molecule const&, double)'
spacegrouptest.cpp:(.text+0x52b3): undefined reference to `Avogadro::Core::AvoSpglib::getHallNumber(Avogadro::Core::Molecule const&, double)'
collect2: error: ld returned 1 exit status
Comment 3 Larry the Git Cow gentoo-dev 2022-03-01 12:12:39 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b9e6d8c7a9ee81fc5e72043d1b3ed399ae8273fd

commit b9e6d8c7a9ee81fc5e72043d1b3ed399ae8273fd
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2022-03-01 12:12:25 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2022-03-01 12:12:25 +0000

    sci-libs/avogadrolibs: drop 1.93.0
    
    Closes: https://bugs.gentoo.org/765811
    Closes: https://bugs.gentoo.org/810505
    Closes: https://bugs.gentoo.org/820767
    Closes: https://bugs.gentoo.org/834116
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-libs/avogadrolibs/Manifest                     |  2 -
 sci-libs/avogadrolibs/avogadrolibs-1.93.0.ebuild   | 95 ----------------------
 ...vogadrolibs-1.93.0-fix_AvogadroLibsConfig.patch | 11 ---
 3 files changed, 108 deletions(-)

Additionally, it has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=68245b30229ce2756c08706b5b075fd0422a40d8

commit 68245b30229ce2756c08706b5b075fd0422a40d8
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2022-03-01 12:12:24 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2022-03-01 12:12:24 +0000

    sci-libs/avogadrolibs: add 1.95.1
    
    Bug: https://bugs.gentoo.org/765811
    Bug: https://bugs.gentoo.org/834116
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-libs/avogadrolibs/Manifest                     |  4 +
 sci-libs/avogadrolibs/avogadrolibs-1.95.1.ebuild   | 89 ++++++++++++++++++++++
 .../files/avogadrolibs-1.95.1-tests.patch          | 13 ++++
 3 files changed, 106 insertions(+)