https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/ Issue: sci-geosciences/grass-7.8.3 fails to compile. Discovered on: amd64 (internal ref: ci)
Created attachment 663784 [details] build.log.xz build log and emerge --info (compressed because it exceeds attachment limit, use 'xzless' to read it)
Possible context of error(s): Error: x86_64-pc-linux-gnu-gcc -E -I/var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3/dist.x86_64-pc-linux-gnu/include -I/var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3/dist.x86_64-pc-linux-gnu/include -D__GLIBC_HAVE_LONG_LONG: /var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3/dist.x86_64-pc-linux-gnu/include/grass/gprojects.h:32:14: fatal error: ogr_srs_api.h: No such file or directory /usr/bin/install: cannot change permissions of '/var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3/dist.x86_64-pc-linux-gnu/docs/html/raster3d_layout.png': No such file or directory Details: <[Errno 2] No such file or directory: 'r.in.png': 'r.in.png'> Details: <[Errno 2] No such file or directory: 'r.in.lidar': 'r.in.lidar'> Details: <[Errno 2] No such file or directory: 'v.in.lidar': 'v.in.lidar'> Details: <[Errno 2] No such file or directory: 'r.out.png': 'r.out.png'> Details: <[Errno 2] No such file or directory: 'v.out.postgis': 'v.out.postgis'> Details: <[Errno 2] No such file or directory: 'r3.out.ascii': 'r3.out.ascii'> Details: <[Errno 2] No such file or directory: 'm.nviz.image': 'm.nviz.image'> Details: <[Errno 2] No such file or directory: 'r.viewshed': 'r.viewshed'> Details: <[Errno 2] No such file or directory: 'r.terraflow': 'r.terraflow'> Details: <[Errno 2] No such file or directory: 'r.surf.fractal': 'r.surf.fractal'> Details: <[Errno 2] No such file or directory: 'v.buffer': 'v.buffer'> Details: <[Errno 2] No such file or directory: 'i.zc': 'i.zc'> Details: <[Errno 2] No such file or directory: 'i.fft': 'i.fft'> Details: <[Errno 2] No such file or directory: 'i.ifft': 'i.ifft'> Details: <[Errno 2] No such file or directory: 'i.atcorr': 'i.atcorr'> Details: <[Errno 2] No such file or directory: 'r.in.png': 'r.in.png'> Details: <[Errno 2] No such file or directory: 'r.in.lidar': 'r.in.lidar'> Details: <[Errno 2] No such file or directory: 'v.in.lidar': 'v.in.lidar'> Details: <[Errno 2] No such file or directory: 'r.out.png': 'r.out.png'> Details: <[Errno 2] No such file or directory: 'v.out.postgis': 'v.out.postgis'> Details: <[Errno 2] No such file or directory: 'r3.out.ascii': 'r3.out.ascii'> Details: <[Errno 2] No such file or directory: 'r.viewshed': 'r.viewshed'> Details: <[Errno 2] No such file or directory: 'r.terraflow': 'r.terraflow'> Details: <[Errno 2] No such file or directory: 'r.surf.fractal': 'r.surf.fractal'> Details: <[Errno 2] No such file or directory: 'v.buffer': 'v.buffer'> Details: <[Errno 2] No such file or directory: 'i.zc': 'i.zc'> Details: <[Errno 2] No such file or directory: 'i.fft': 'i.fft'> Details: <[Errno 2] No such file or directory: 'i.ifft': 'i.ifft'> Details: <[Errno 2] No such file or directory: 'i.atcorr': 'i.atcorr'> Details: <[Errno 2] No such file or directory: 'g.gui.dbmgr': 'g.gui.dbmgr'> Error: x86_64-pc-linux-gnu-gcc -E -I/var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3/dist.x86_64-pc-linux-gnu/include -I/var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3/dist.x86_64-pc-linux-gnu/include -D__GLIBC_HAVE_LONG_LONG: /var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3/dist.x86_64-pc-linux-gnu/include/grass/gprojects.h:32:14: fatal error: ogr_srs_api.h: No such file or directory
The errors of comment #2 are not the cause of the build failure. The error messages are meaningless, because the modules cannot be found since they are not built by the choosen USE flags. This seems to be an odd behaviour of the build system of GRASS GIS, but not relevant to this bug. The build log shows that the error arises from the module r3.out.ascii. make[1]: Leaving directory '/var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3' GRASS GIS 7.8.3 exported compilation log -------------------------------------------------- Started compilation: Sun Oct 4 17:28:40 CEST 2020 -- Errors in: /var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3/raster3d/r3.out.ascii -- In case of errors please change into the directory with error and run 'make'. If you get multiple errors, you need to deal with them in the order they appear in the error log. If you get an error building a library, you will also get errors from anything which uses the library. -- Finished compilation: Sun Oct 4 17:29:52 CEST 2020 make: *** [Makefile:70: default] Error 1 But I'm not able to reproduce the failure in my test setup nor can I find anything suspicious in the build log. Can you please provide a build log with MAKEOPTS="-j1" to rule out a race condition issue during the build process?
Seems to be a race condition during files installation: /usr/lib/portage/python3.7/ebuild-helpers/xattr/install -c -m 644 raster3d_layout.png /var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3/dist.x86_64-pc-linux-gnu/docs/html/raster3d_layout.png ... /usr/lib/portage/python3.7/ebuild-helpers/xattr/install -c -m 644 raster3d_layout.png /var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3/dist.x86_64-pc-linux-gnu/docs/html/raster3d_layout.png ... /usr/bin/install: cannot change permissions of '/var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3/dist.x86_64-pc-linux-gnu/docs/html/raster3d_layout.png': No such file or directory make[3]: *** [../../include/Make/HtmlRules.make:14: /var/tmp/portage/sci-geosciences/grass-7.8.3/work/grass-7.8.3/dist.x86_64-pc-linux-gnu/docs/html/raster3d_layout.png] Error 1 make[3]: *** Waiting for unfinished jobs.... Locking the target file should fix it. Unfortunately I cannot test the fix, because I don't have access to a machine with so many CPUs.
Created attachment 664546 [details, diff] grass-7.8-flock.patch proposed patch
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=55963a3f7ff33af3182040c076132590fc9be166 commit 55963a3f7ff33af3182040c076132590fc9be166 Author: Mario Haustein <mario.haustein@hrz.tu-chemnitz.de> AuthorDate: 2020-10-10 14:34:30 +0000 Commit: Joonas Niilola <juippis@gentoo.org> CommitDate: 2020-11-25 08:16:46 +0000 sci-geosciences/grass: fix build failure Fix build failure during highly parallel build. Closes: https://bugs.gentoo.org/746590 Signed-off-by: Mario Haustein <mario.haustein@hrz.tu-chemnitz.de> Package-Manager: Portage-3.0.4, Repoman-3.0.1 Signed-off-by: Joonas Niilola <juippis@gentoo.org> sci-geosciences/grass/files/grass-7.8-flock.patch | 17 +++++++++++++++++ sci-geosciences/grass/grass-7.8.3.ebuild | 5 +++++ 2 files changed, 22 insertions(+)
