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Bug 725856 - sci-libs/tensorflow-estimator-2.2.0: ModuleNotFoundError: No module named 'six'
Summary: sci-libs/tensorflow-estimator-2.2.0: ModuleNotFoundError: No module named 'six'
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Jason Zaman
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2020-05-28 09:55 UTC by Guilherme Amadio
Modified: 2020-06-08 05:02 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (sci-libs:tensorflow-estimator-2.2.0:20200603-144754.log,6.42 KB, text/plain)
2020-06-03 14:50 UTC, Jonas Stein
Details

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Description Guilherme Amadio gentoo-dev 2020-05-28 09:55:07 UTC
Even though I have both dev-python/six and dev-python/pip installed, but bazel is complaining about not being able to 'import six'. The build log is short, so it's pasted in full below (tensorflow is also already installed):

# emerge -av1 --jobs=1 tensorflow-estimator 

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  N     ] sci-libs/tensorflow-estimator-2.2.0::gentoo  PYTHON_TARGETS="python3_6 python3_7" 0 KiB

Total: 1 package (1 new), Size of downloads: 0 KiB

Would you like to merge these packages? [Yes/No] 

>>> Verifying ebuild manifests

>>> Emerging (1 of 1) sci-libs/tensorflow-estimator-2.2.0::gentoo
 * tensorflow-estimator-2.2.0.tar.gz BLAKE2B SHA512 size ;-) ...                                                                                                                                                                        [ ok ]
 * bazelbuild-rules_cc-0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip BLAKE2B SHA512 size ;-) ...                                                                                                                                         [ ok ]
 * bazelbuild-rules_cc-8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip BLAKE2B SHA512 size ;-) ...                                                                                                                                         [ ok ]
 * bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip BLAKE2B SHA512 size ;-) ...                                                                                                                                       [ ok ]
>>> Unpacking source...
>>> Unpacking tensorflow-estimator-2.2.0.tar.gz to /var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work
Copying bazelbuild-rules_cc-0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip to bazel distdir as 0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip
Copying bazelbuild-rules_cc-8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip to bazel distdir as 8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip
Copying bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip to bazel distdir as 7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip
>>> Source unpacked in /var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work
>>> Preparing source in /var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0 ...
bazel --bazelrc=/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/temp/bazelrc --output_base=/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0-bazel-base build //tensorflow_estimator/tools/pip_package:build_pip_package
Extracting Bazel installation...
WARNING: ignoring LD_PRELOAD in environment.
INFO: Analyzed target //tensorflow_estimator/tools/pip_package:build_pip_package (24 packages loaded, 283 targets configured).
INFO: Found 1 target...
ERROR: /var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0/tensorflow_estimator/BUILD:78:1: Executing genrule //tensorflow_estimator:estimator_python_api_gen_compat_v2 failed (Exit 1)
Traceback (most recent call last):
  File "/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0-bazel-base/execroot/org_tensorflow_estimator/bazel-out/host/bin/tensorflow_estimator/create_tensorflow_estimator.python.estimator_api_2_estimator_python_api_gen_compat_v2.runfiles/org_tensorflow_estimator/tensorflow_estimator/python/estimator/api/create_python_api_wrapper.py", line 26, in <module>
    from tensorflow_estimator.python.estimator import estimator_lib  # pylint: disable=unused-import
  File "/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0-bazel-base/execroot/org_tensorflow_estimator/bazel-out/host/bin/tensorflow_estimator/create_tensorflow_estimator.python.estimator_api_2_estimator_python_api_gen_compat_v2.runfiles/org_tensorflow_estimator/tensorflow_estimator/python/estimator/estimator_lib.py", line 22, in <module>
    from tensorflow_estimator.python.estimator.canned.baseline import BaselineClassifier
  File "/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0-bazel-base/execroot/org_tensorflow_estimator/bazel-out/host/bin/tensorflow_estimator/create_tensorflow_estimator.python.estimator_api_2_estimator_python_api_gen_compat_v2.runfiles/org_tensorflow_estimator/tensorflow_estimator/python/estimator/canned/baseline.py", line 52, in <module>
    import six
ModuleNotFoundError: No module named 'six'
Target //tensorflow_estimator/tools/pip_package:build_pip_package failed to build
ERROR: /var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0/tensorflow_estimator/tools/pip_package/BUILD:18:1 Executing genrule //tensorflow_estimator:estimator_python_api_gen_compat_v2 failed (Exit 1)
INFO: Elapsed time: 3.254s, Critical Path: 0.11s
INFO: 0 processes.
FAILED: Build did NOT complete successfully
 * ERROR: sci-libs/tensorflow-estimator-2.2.0::gentoo failed (compile phase):
 *   ebazel failed
 * 
 * Call stack:
 *     ebuild.sh, line  125:  Called src_compile
 *   environment, line 3459:  Called ebazel 'build' '//tensorflow_estimator/tools/pip_package:build_pip_package'
 *   environment, line 1832:  Called die
 * The specific snippet of code:
 *       "${@}" || die "ebazel failed"
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/tensorflow-estimator-2.2.0::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/tensorflow-estimator-2.2.0::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0'
 * S: '/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0'

>>> Failed to emerge sci-libs/tensorflow-estimator-2.2.0, Log file:

>>>  '/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/temp/build.log'

 * Messages for package sci-libs/tensorflow-estimator-2.2.0:

 * ERROR: sci-libs/tensorflow-estimator-2.2.0::gentoo failed (compile phase):
 *   ebazel failed
 * 
 * Call stack:
 *     ebuild.sh, line  125:  Called src_compile
 *   environment, line 3459:  Called ebazel 'build' '//tensorflow_estimator/tools/pip_package:build_pip_package'
 *   environment, line 1832:  Called die
 * The specific snippet of code:
 *       "${@}" || die "ebazel failed"
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/tensorflow-estimator-2.2.0::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/tensorflow-estimator-2.2.0::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0'
 * S: '/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/work/estimator-2.2.0'
 * 
 * The following package has failed to build, install, or execute postinst:
 * 
 *  (sci-libs/tensorflow-estimator-2.2.0:0/0::gentoo, ebuild scheduled for merge), Log file:
 *   '/var/tmp/portage/sci-libs/tensorflow-estimator-2.2.0/temp/build.log'
 *
Comment 1 Jonas Stein gentoo-dev 2020-06-03 14:50:17 UTC
Created attachment 643258 [details]
build.log

confirmed.

emerge --info '=sci-libs/tensorflow-estimator-2.2.0::gentoo'
Portage 2.3.100 (python 3.7.7-final-0, default/linux/amd64/17.1/systemd, gcc-9.3.0, glibc-2.31-r3, 5.6.14-gentoo-gf090c5b-dirty x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-5.6.14-gentoo-gf090c5b-dirty-x86_64-AMD_Ryzen_9_3950X_16-Core_Processor-with-gentoo-2.7
KiB Mem:    65801752 total,  50731800 free
KiB Swap:     524284 total,    524284 free
Head commit of repository jstein-overlay: 6ea7237a5afee6a9ef9920d650f0f351736c11cd

Timestamp of repository gentoo: Wed, 03 Jun 2020 06:00:01 +0000
Head commit of repository gentoo: 6054c3a7e763a55bb63221af214bd1abba960dcd
sh bash 5.0_p17
ld GNU ld (Gentoo 2.34 p4) 2.34.0
app-shells/bash:          5.0_p17::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.30.3::gentoo
dev-lang/python:          2.7.18::gentoo, 3.7.7-r2::gentoo, 3.8.3::gentoo, 3.9.0_beta1::gentoo
dev-util/cmake:           3.17.3::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.7::gentoo
sys-apps/sandbox:         2.20::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
sys-devel/automake:       1.16.2::gentoo
sys-devel/binutils:       2.34-r1::gentoo
sys-devel/gcc:            9.3.0-r1::gentoo
sys-devel/gcc-config:     2.3::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.7::gentoo (virtual/os-headers)
sys-libs/glibc:           2.31-r3::gentoo
Repositories:

jstein-overlay
    location: /usr/local/overlays/jstein-overlay
    sync-type: git
    sync-uri: https://github.com/jonasstein/jstein-overlay
    masters: gentoo
    priority: -1001

gentoo
    location: /var/db/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts: 

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE bh-luxi"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/db/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.netcologne.de/gentoo/"
LANG="en_GB.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en"
MAKEOPTS="-j28"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X acl alsa amd64 bash-completion berkdb bzip2 cdda cdr cli corefonts crypt cups dbus dbusudev dri dvd dvdr encode flac fortran gdbm gif git gles2-only iconv ipv6 jpeg latex libtirpc mad mp3 mp4 mpeg mpx multilib ncurses nls nptl ogg opengl openmp pam pcre pdf pm-utils png popcnt pulseaudio qt5 readline seccomp smp sna split-usr ssl svg systemd tcpd tiff truetype udev udisks unicode utf8 vim vim-syntax vorbis xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 f16c fma3 pclmul popcnt sha sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="evdev keyboard mouse" KERNEL="linux" L10N="en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" PYTHON_TARGETS="python2_7 python3_7" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu radeonsi" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 2 Larry the Git Cow gentoo-dev 2020-06-08 05:02:28 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4f0a1a643c32e762f1cf8f07cc14da184788080d

commit 4f0a1a643c32e762f1cf8f07cc14da184788080d
Author:     Jason Zaman <perfinion@gentoo.org>
AuthorDate: 2020-06-08 04:51:48 +0000
Commit:     Jason Zaman <perfinion@gentoo.org>
CommitDate: 2020-06-08 04:55:30 +0000

    sci-libs/tensorflow-estimator: fix compile error
    
    The bazel build step used the incorrect python, so duplicate the sources
    and build multiple times
    
    Closes: https://bugs.gentoo.org/725856
    Package-Manager: Portage-2.3.99, Repoman-2.3.22
    Signed-off-by: Jason Zaman <perfinion@gentoo.org>

 ....2.0.ebuild => tensorflow-estimator-2.2.0-r1.ebuild} | 17 +++++++++++------
 1 file changed, 11 insertions(+), 6 deletions(-)