In file included from bt2_idx.h:59, from bt2_build.cpp:27: processor_support.h:52:22: error: extended character “ is not valid in an identifier 52 | std::cerr << “ERROR: please define __cpuid() for this build.\n”; | ^ processor_support.h:52:72: error: extended character ” is not valid in an identifier ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1-libressl-20200511-231200 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10.1.0 * clang version 10.0.0 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/10/bin /usr/lib/llvm/10 10.0.0 Available Python interpreters, in order of preference: [1] python3.8 [2] python3.7 (fallback) [3] python3.6 (fallback) [4] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * The Glorious Glasgow Haskell Compilation System, version 8.0.2 timestamp(s) of HEAD at this tinderbox image: /var/db/repos/gentoo Wed 13 May 2020 04:05:48 PM UTC /var/db/repos/libressl Sat 11 Apr 2020 05:02:25 AM UTC emerge -qpvO sci-biology/bowtie [ebuild N ] sci-biology/bowtie-2.2.9 USE="tbb -examples" CPU_FLAGS_X86="sse2"
Created attachment 638620 [details] emerge-info.txt
Created attachment 638622 [details] emerge-history.txt
Created attachment 638624 [details] environment
Created attachment 638626 [details] etc.portage.tbz2
Created attachment 638628 [details] sci-biology:bowtie-2.2.9:20200513-162919.log
Created attachment 638630 [details] temp.tbz2
Dear treecleaner@: I'm still able to reproduce this issue right now. Since it has not been fixed for a long time, I'd suggest to evaluate if it is the case to remove this package from the tree. Thanks
Created attachment 729276 [details, diff] Fix the multibyte quotation to ASCII one. Here is the patch, which can fix this issue. Tested on stage3 released at 210725. It seems that there's no one interested in it, though.
*** Bug 731746 has been marked as a duplicate of this bug. ***
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b3c6b97c03059d44b801c71c3ccf7a6165593149 commit b3c6b97c03059d44b801c71c3ccf7a6165593149 Author: David Seifert <soap@gentoo.org> AuthorDate: 2021-08-01 16:40:42 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2021-08-01 16:40:42 +0000 sci-biology/bowtie: drop 2.2.9 Closes: https://bugs.gentoo.org/722870 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/bowtie/Manifest | 1 - sci-biology/bowtie/bowtie-2.2.9.ebuild | 61 ---------------------- .../bowtie/files/bowtie-2.2.9-fix-c++14.patch | 29 ---------- 3 files changed, 91 deletions(-) Additionally, it has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=20633430c439732edc1dd09d5b76acefcaa54c9d commit 20633430c439732edc1dd09d5b76acefcaa54c9d Author: David Seifert <soap@gentoo.org> AuthorDate: 2021-08-01 16:40:40 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2021-08-01 16:40:40 +0000 sci-biology/bowtie: add 2.4.4 Bug: https://bugs.gentoo.org/722870 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/bowtie/Manifest | 1 + sci-biology/bowtie/bowtie-2.4.4.ebuild | 55 ++++++++++++++++++++++++++++++++++ 2 files changed, 56 insertions(+)
