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Bug 721802 - sci-libs/vtk-8.2.0 and dev-python/mpi4py-3.0.2: file collission
Summary: sci-libs/vtk-8.2.0 and dev-python/mpi4py-3.0.2: file collission
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2020-05-09 08:18 UTC by Miroslav Šulc
Modified: 2020-05-12 15:34 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description Miroslav Šulc gentoo-dev 2020-05-09 08:18:31 UTC
* Messages for package dev-python/mpi4py-3.0.2:

 * This package will overwrite one or more files that may belong to other
 * packages (see list below).
 * 
 * Detected file collision(s):
 * 
 * 	/usr/lib64/python3.6/site-packages/mpi4py/__init__.py
 * 	/usr/lib64/python3.6/site-packages/mpi4py/__main__.py
 * 	/usr/lib64/python3.6/site-packages/mpi4py/mpi.cfg
 * 	/usr/lib64/python3.6/site-packages/mpi4py/__pycache__/__init__.cpython-36.opt-1.pyc
 * 	/usr/lib64/python3.6/site-packages/mpi4py/__pycache__/__main__.cpython-36.opt-1.pyc
 * 	/usr/lib64/python3.6/site-packages/mpi4py/__pycache__/__init__.cpython-36.pyc
 * 	/usr/lib64/python3.6/site-packages/mpi4py/__pycache__/__main__.cpython-36.pyc
 * 	/usr/lib64/python3.6/site-packages/mpi4py/include/mpi4py/mpi4py.h
 * 	/usr/lib64/python3.6/site-packages/mpi4py/include/mpi4py/mpi4py.MPI.h
 * 	/usr/lib64/python3.6/site-packages/mpi4py/include/mpi4py/mpi4py.MPI_api.h
 * 	/usr/lib64/python3.6/site-packages/mpi4py/include/mpi4py/mpi4py.i
 * 	/usr/lib64/python3.6/site-packages/mpi4py/include/mpi4py/mpi.pxi
 * 	/usr/lib64/python3.6/site-packages/mpi4py/lib-pmpi/libvt-hyb.so
 * 	/usr/lib64/python3.6/site-packages/mpi4py/lib-pmpi/libvt.so
 * 	/usr/lib64/python3.6/site-packages/mpi4py/lib-pmpi/libvt-mpi.so
 * 	/usr/lib64/python3.6/site-packages/mpi4py/lib-pmpi/libmpe.so
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * sci-libs/vtk-8.2.0:0::gentoo
 * 	/usr/lib64/python3.6/site-packages/mpi4py/__init__.py
 * 	/usr/lib64/python3.6/site-packages/mpi4py/__main__.py
 * 	/usr/lib64/python3.6/site-packages/mpi4py/__pycache__/__init__.cpython-36.opt-1.pyc
 * 	/usr/lib64/python3.6/site-packages/mpi4py/__pycache__/__init__.cpython-36.pyc
 * 	/usr/lib64/python3.6/site-packages/mpi4py/__pycache__/__main__.cpython-36.opt-1.pyc
 * 	/usr/lib64/python3.6/site-packages/mpi4py/__pycache__/__main__.cpython-36.pyc
 * 	/usr/lib64/python3.6/site-packages/mpi4py/include/mpi4py/mpi.pxi
 * 	/usr/lib64/python3.6/site-packages/mpi4py/include/mpi4py/mpi4py.MPI.h
 * 	/usr/lib64/python3.6/site-packages/mpi4py/include/mpi4py/mpi4py.MPI_api.h
 * 	/usr/lib64/python3.6/site-packages/mpi4py/include/mpi4py/mpi4py.h
 * 	/usr/lib64/python3.6/site-packages/mpi4py/include/mpi4py/mpi4py.i
 * 	/usr/lib64/python3.6/site-packages/mpi4py/lib-pmpi/libmpe.so
 * 	/usr/lib64/python3.6/site-packages/mpi4py/lib-pmpi/libvt-hyb.so
 * 	/usr/lib64/python3.6/site-packages/mpi4py/lib-pmpi/libvt-mpi.so
 * 	/usr/lib64/python3.6/site-packages/mpi4py/lib-pmpi/libvt.so
 * 	/usr/lib64/python3.6/site-packages/mpi4py/mpi.cfg
 * 
 * Package 'dev-python/mpi4py-3.0.2' NOT merged due to file collisions.
 * If necessary, refer to your elog messages for the whole content of the
 * above message.


# emerge -va1 vtk

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  N     ] dev-python/mpi4py-3.0.2::gentoo  USE="-doc -examples -test" PYTHON_TARGETS="python3_6 python3_7" 0 KiB
[ebuild   R    ] sci-libs/vtk-8.2.0::gentoo  USE="X boost ffmpeg mpi python qt5 rendering tcl theora tk -R -all-modules (-aqua) -doc (-examples) -gdal -imaging -java -json -odbc -offscreen -postgres -tbb -test -views -web -xdmf2" PYTHON_SINGLE_TARGET="python3_6" VIDEO_CARDS="-nvidia" 0 KiB

Total: 2 packages (1 new, 1 reinstall), Size of downloads: 0 KiB
Comment 1 Larry the Git Cow gentoo-dev 2020-05-12 15:34:36 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3f2c91135dfa6781d30f033979b5c751bb4a849b

commit 3f2c91135dfa6781d30f033979b5c751bb4a849b
Author:     Matthias Maier <tamiko@gentoo.org>
AuthorDate: 2020-05-12 13:57:45 +0000
Commit:     Matthias Maier <tamiko@gentoo.org>
CommitDate: 2020-05-12 15:34:15 +0000

    sci-libs/vtk: fix 8.2.0 ebuild
    
     - fix bundled libproj configuration. Thanks to Tiernan Hubble for
       pointing this out
    
     - use system mpi4py
    
    Closes: https://bugs.gentoo.org/720372
    Closes: https://bugs.gentoo.org/721412
    Closes: https://bugs.gentoo.org/721802
    Package-Manager: Portage-2.3.99, Repoman-2.3.22
    Signed-off-by: Matthias Maier <tamiko@gentoo.org>

 sci-libs/vtk/vtk-8.2.0.ebuild | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)