Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 715636 - sci-biology/ncbi-tools-2.2.26-r2 : * (no error message)
Summary: sci-biology/ncbi-tools-2.2.26-r2 : * (no error message)
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo musl team
URL:
Whiteboard:
Keywords: PMASKED
Depends on:
Blocks:
 
Reported: 2020-03-31 15:54 UTC by Toralf Förster
Modified: 2021-08-30 17:39 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,15.28 KB, text/plain)
2020-03-31 15:54 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,163.51 KB, text/plain)
2020-03-31 15:54 UTC, Toralf Förster
Details
environment (environment,91.34 KB, text/plain)
2020-03-31 15:54 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,19.15 KB, application/x-bzip)
2020-03-31 15:54 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,1.62 KB, application/x-bzip)
2020-03-31 15:55 UTC, Toralf Förster
Details
sci-biology:ncbi-tools-2.2.26-r2:20200331-123030.log (sci-biology:ncbi-tools-2.2.26-r2:20200331-123030.log,2.22 KB, text/plain)
2020-03-31 15:55 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2020-03-31 15:54:47 UTC
 * ERROR: sci-biology/ncbi-tools-2.2.26-r2::gentoo failed (compile phase):
 *   (no error message)
 * 

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0_musl-20200328-141627

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-gentoo-linux-musl-9.3.0 *
clang version 10.0.0 
Target: x86_64-gentoo-linux-musl
Thread model: posix
InstalledDir: /usr/lib/llvm/10/bin
/usr/lib/llvm/10
10.0.0
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.7
  [3]   python3.6
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.42.0 *

timestamp of HEAD at this tinderbox image:
/var/db/repos/gentoo	Tue Mar 31 11:38:57 UTC 2020
/var/db/repos/musl	Fri Mar 27 00:25:27 UTC 2020

emerge -qpvO sci-biology/ncbi-tools
[ebuild  N    ] sci-biology/ncbi-tools-2.2.26-r2  USE="-X -doc -static-libs"
Comment 1 Toralf Förster gentoo-dev 2020-03-31 15:54:50 UTC
Created attachment 627980 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-03-31 15:54:53 UTC
Created attachment 627982 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2020-03-31 15:54:55 UTC
Created attachment 627984 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2020-03-31 15:54:58 UTC
Created attachment 627986 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2020-03-31 15:55:00 UTC
Created attachment 627988 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2020-03-31 15:55:03 UTC
Created attachment 627990 [details]
sci-biology:ncbi-tools-2.2.26-r2:20200331-123030.log
Comment 7 Larry the Git Cow gentoo-dev 2021-08-30 17:39:17 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=59b2be273d92b67c4c7f581657151a5e7cbb63ae

commit 59b2be273d92b67c4c7f581657151a5e7cbb63ae
Author:     Jakov Smolić <jsmolic@gentoo.org>
AuthorDate: 2021-08-30 17:17:23 +0000
Commit:     Jakov Smolić <jsmolic@gentoo.org>
CommitDate: 2021-08-30 17:38:50 +0000

    sci-biology/ncbi-tools: Remove last-rited package
    
    Closes: https://bugs.gentoo.org/649930
    Closes: https://bugs.gentoo.org/782790
    Closes: https://bugs.gentoo.org/741188
    Closes: https://bugs.gentoo.org/715636
    Closes: https://bugs.gentoo.org/710338
    Closes: https://bugs.gentoo.org/701340
    Closes: https://bugs.gentoo.org/586982
    Closes: https://bugs.gentoo.org/295584
    Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>

 profiles/package.mask                              |   6 -
 sci-biology/ncbi-tools/Manifest                    |   1 -
 sci-biology/ncbi-tools/files/21ncbi-r1             |   6 -
 .../files/ncbi-tools-2.2.26-_DEFAULT_SOURCE.patch  |  81 ----------
 .../files/ncbi-tools-2.2.26-bfr-overflow.patch     | 103 -------------
 .../files/ncbi-tools-2.2.26-format-security.patch  | 124 ---------------
 .../ncbi-tools/files/ncbi-tools-extra_vib.patch    |  37 -----
 sci-biology/ncbi-tools/files/ncbi-tools-lop.patch  |  15 --
 sci-biology/ncbi-tools/files/ncbirc                |   2 -
 sci-biology/ncbi-tools/metadata.xml                |   8 -
 sci-biology/ncbi-tools/ncbi-tools-2.2.26-r3.ebuild | 169 ---------------------
 11 files changed, 552 deletions(-)