Created attachment 599674 [details] build.log error: Name clash for '<p/var/tmp/portage/dev-libs/boost-1.72.0/work/boost_1_72_0-abi_x86_64.amd64/stage/lib>mpi.so' error: error: Tried to build the target twice, with property sets having error: these incompatible properties: error: error: - <include>/usr/include/python2.7 <python>2.7 <xdll-path>/var/tmp/portage/dev-libs/boost-1.72.0/work/boost_1_72_0-abi_x86_64.amd64/bin.v2/libs/mpi/build/gcc-9.2/gentoorelease/local-visibility-global/pch-off/python-2.7/threading-multi/visibility-hidden <xdll-path>/var/tmp/portage/dev-libs/boost-1.72.0/work/boost_1_72_0-abi_x86_64.amd64/bin.v2/libs/python/build/gcc-9.2/gentoorelease/pch-off/python-2.7/threading-multi/visibility-hidden error: - <include>/usr/include/python3.6m <python>3.6 <xdll-path>/var/tmp/portage/dev-libs/boost-1.72.0/work/boost_1_72_0-abi_x86_64.amd64/bin.v2/libs/mpi/build/gcc-9.2/gentoorelease/local-visibility-global/pch-off/python-3.6/threading-multi/visibility-hidden <xdll-path>/var/tmp/portage/dev-libs/boost-1.72.0/work/boost_1_72_0-abi_x86_64.amd64/bin.v2/libs/python/build/gcc-9.2/gentoorelease/pch-off/python-3.6/threading-multi/visibility-hidden # emerge --info '=dev-libs/boost-1.72.0::gentoo' Portage 2.3.81 (python 3.6.9-final-0, default/linux/amd64/17.1/hardened, gcc-9.2.0, glibc-2.30-r3, 5.4.2-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-5.4.2-gentoo-x86_64-Intel-R-_Core-TM-_i7-3770K_CPU_@_3.50GHz-with-gentoo-2.6 KiB Mem: 32815480 total, 3956692 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Sun, 15 Dec 2019 19:00:01 +0000 Head commit of repository gentoo: 2e6417e1a4c01e962c8dc7cb2d5e5e1127330044 sh bash 5.0_p11 ld GNU ld (Gentoo 2.33.1 p1) 2.33.1 app-shells/bash: 5.0_p11::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.30.1::gentoo dev-lang/python: 2.7.17::gentoo, 3.5.9::gentoo, 3.6.9::gentoo, 3.7.5-r1::gentoo, 3.8.0::gentoo dev-util/cmake: 3.16.1::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.42.1::gentoo sys-apps/sandbox: 2.18::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r5::gentoo sys-devel/automake: 1.16.1-r2::gentoo sys-devel/binutils: 2.33.1::gentoo sys-devel/gcc: 9.2.0-r2::gentoo sys-devel/gcc-config: 2.1::gentoo sys-devel/libtool: 2.4.6-r5::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 5.4::gentoo (virtual/os-headers) sys-libs/glibc: 2.30-r3::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-metamanifest: yes sync-rsync-verify-max-age: 24 sync-rsync-extra-opts: sync-rsync-vcs-ignore: true sync-rsync-verify-jobs: 1 fordfrog location: /usr/src/fordfrog.git masters: gentoo priority: 0 local location: /usr/local/portage masters: gentoo audio-overlay location: /var/lib/layman/audio-overlay masters: gentoo priority: 50 brother-overlay location: /var/lib/layman/brother-overlay masters: gentoo priority: 50 qt location: /var/lib/layman/qt masters: gentoo priority: 50 waebbl location: /var/lib/layman/waebbl masters: gentoo priority: 50 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /opt/brother/scanner/brscan4/brsanenetdevice4.cfg /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.0/conf /usr/share/maven-bin-3.1/conf /usr/share/maven-bin-3.2/conf /usr/share/maven-bin-3.3/conf /usr/share/maven-bin-3.6/conf" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--misspell-suggestions n" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="cs_CZ.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="cs cs_CZ en en_US en_UK" MAKEOPTS="-j9" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl alsa amd64 aubio bzip2 cdda cddb cdr color-management colord crypt cups cxx d3d9 dbus dia dssi dvb dvd elogind exif ffmpeg flac gegl gif gphoto2 gsm gtk gtk3 hardened hddtemp http2 iconv icu id3tag ipv6 jack jacksession javafx jpeg ladspa lastfm latex lcms libass libnotify libproxy libsamplerate libtirpc lilypond lm-sensors lv2 mad modplug mp3 mpeg mpi mtp multilib musepack ncurses nls nptl ocr ogg opencl openexr opengl openmp opus osc pam pcre pdf pie png policykit pulseaudio qt5 raw readline rubberband samba scanner seccomp sf2 sndfile soundio speex spell split-usr ssl ssp startup-notification svg svg2 taglib theora tiff timidity tk tray truetype udev unicode usb vaapi vdpau visio vorbis vpx vst wavpack webp widevine wmf x264 x265 xattr xinerama xmp xtpax xv xvid zlib" ABI_X86="32 64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="alias auth_basic authn_core authn_file authz_core authz_host authz_user cgi cgid deflate dir expires filter headers http2 include info log_config mime mime_magic negotiation proxy proxy_ajp rewrite setenvif socache_shmcb status unixd vhost_alias" APACHE2_MPMS="event" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx f16c mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev libinput synaptics wacom" KERNEL="linux" L10N="cs cs-CZ en en-US en-UK" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" NETBEANS_MODULES="*" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24 ruby25" SANE_BACKENDS="genesys" USERLAND="GNU" VIDEO_CARDS="intel i915 i965 radeon radeonsi" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS ================================================================= Package Settings ================================================================= dev-libs/boost-1.72.0::gentoo was built with the following: USE="bzip2 context icu nls python threads zlib -debug -doc -lzma -mpi -numpy -static-libs -tools -zstd" ABI_X86="32 (64) (-x32)" PYTHON_TARGETS="python2_7 python3_6 -python3_7 -python3_8" CXXFLAGS="-march=native -O2 -pipe -std=c++14" # emerge -pqv '=dev-libs/boost-1.72.0::gentoo' [ebuild R ] dev-libs/boost-1.72.0 USE="bzip2 context icu mpi* nls python threads zlib -debug -doc -lzma -numpy -static-libs -tools -zstd" ABI_X86="32 (64) (-x32)" PYTHON_TARGETS="python2_7 python3_6 -python3_7 -python3_8"
Created attachment 599676 [details] environment
Building with only one Python library is another 'fix' I've found after switching targets around. It doesn't matter which libraries you have enabled, it needs to be just one for now. --- There's also these messages: /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/librt.so when searching for -lrt /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/librt.a when searching for -lrt /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libicudata.so when searching for -licudata /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libicui18n.so when searching for -licui18n /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libicuuc.so when searching for -licuuc /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc Which usually indicates that $(libdir) was accidentally hardcoded to /usr/lib instead of it being a variable for /usr/lib64. The beginning of the command that preceded it: "x86_64-pc-linux-gnu-g++" -L"/usr/bin" -L"/usr/lib" -o "bin.v2/libs/log/build/gcc-9.2/gentoodebug/pch-off/threadapi-pthread/threading-multi/visibility-hidden/libboost_log.so.1.72.0" -Wl,-h -Wl,libboost_log.so.1.72.0 -shared -Wl,--start-group "bin.v2/libs/log/build/gcc-9.2/gentoodebug/pch-off/threadapi-pthread/threading-multi/visibility-hidden/attribute_name.o"
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=af50ab943bce9e10c97e47ea5c7da87e11b51be9 commit af50ab943bce9e10c97e47ea5c7da87e11b51be9 Author: David Seifert <soap@gentoo.org> AuthorDate: 2019-12-22 23:12:28 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2019-12-22 23:12:28 +0000 dev-libs/boost: Fix Boost.MPI with python * A big thanks goes out to @pdimov in helping me patch Boost.Build to produce per py-impl MPI variants. Closes: boostorg/mpi#112 Closes: https://bugs.gentoo.org/703036 Package-Manager: Portage-2.3.82, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org> dev-libs/boost/boost-1.72.0.ebuild | 21 ++++++++- .../files/boost-1.72.0-boost-mpi-python.patch | 50 ++++++++++++++++++++++ 2 files changed, 70 insertions(+), 1 deletion(-)
