Created attachment 578670 [details] build.log From build.log: >>> Installing (10 of 18) dev-texlive/texlive-latexrecommended-2019::gentoo * checking 1222 files for package collisions * This package will overwrite one or more files that may belong to other * packages (see list below). You can use a command such as `portageq * owners / <filename>` to identify the installed package that owns a * file. If portageq reports that only one package owns a file then do * NOT file a bug report. A bug report is only useful if it identifies at * least two or more packages that are known to install the same file(s). * If a collision occurs and you can not explain where the file came from * then you should simply ignore the collision since there is not enough * information to determine if a real problem exists. Please do NOT file * a bug report at https://bugs.gentoo.org/ unless you report exactly * which two packages install the same file(s). See * https://wiki.gentoo.org/wiki/Knowledge_Base:Blockers for tips on how * to solve the problem. And once again, please do NOT file a bug report * unless you have completely understood the above message. * * Detected file collision(s): * * /local/tmp/huber/prefix/usr/share/texmf-dist/tex/latex/footnotehyper/footnotehyper.sty * /local/tmp/huber/prefix/usr/share/texmf-dist/tex/latex/etoolbox/etoolbox.sty * /local/tmp/huber/prefix/usr/share/texmf-dist/tex/latex/etoolbox/etoolbox.def * /local/tmp/huber/prefix/usr/share/texmf-dist/tex/latex/ucharcat/ucharcat.sty * * Searching all installed packages for file collisions... * * Press Ctrl-C to Stop * * dev-texlive/texlive-luatex-2017:0::gentoo * /usr/share/texmf-dist/tex/latex/ucharcat/ucharcat.sty * * dev-texlive/texlive-latexextra-2017:0::gentoo * /usr/share/texmf-dist/tex/latex/etoolbox/etoolbox.def * /usr/share/texmf-dist/tex/latex/etoolbox/etoolbox.sty * /usr/share/texmf-dist/tex/latex/footnotehyper/footnotehyper.sty * * Package 'dev-texlive/texlive-latexrecommended-2019' NOT merged due to * file collisions. If necessary, refer to your elog messages for the * whole content of the above message. >>> Failed to install dev-texlive/texlive-latexrecommended-2019, Log file: $ emerge --info Portage 2.3.67 (python 3.6.8-final-0, default/linux/amd64/17.0/no-multilib/prefix/kernel-3.2+, gcc-8.3.0, glibc-2.29-r2, 4.4.179-99-default x86_64) ================================================================= System uname: Linux-4.4.179-99-default-x86_64-Intel-R-_Core-TM-_i5-6500_CPU_@_3.20GHz-with-SuSE-42.3-x86_64 KiB Mem: 8053000 total, 1624928 free KiB Swap: 8384508 total, 8380016 free Timestamp of repository gentoo: Tue, 04 Jun 2019 10:00:01 +0000 Head commit of repository gentoo: 90bd8001e3e40d87f31fe1f199754c57c70d403d Timestamp of repository science: Sun, 02 Jun 2019 23:24:48 +0000 Head commit of repository science: 13b4161c02ad6a65397790b5167d5ec3e1e69483 sh bash 5.0_p7 ld GNU ld (Gentoo 2.32 p2) 2.32.0 app-shells/bash: 5.0_p7::gentoo dev-lang/perl: 5.30.0::gentoo dev-lang/python: 2.7.16::gentoo, 3.6.8::gentoo, 3.7.3::gentoo dev-util/cmake: 3.14.5::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/sandbox: 2.17::gentoo sys-devel/autoconf: 2.69-r4::gentoo sys-devel/automake: 1.16.1-r1::gentoo sys-devel/binutils: 2.32-r1::gentoo sys-devel/gcc: 8.3.0::gentoo sys-devel/gcc-config: 2.0::gentoo sys-devel/libtool: 2.4.6-r5::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 5.0-r1::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r2::gentoo Repositories: gentoo location: /scratch/huber/usr_portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-jobs: 1 sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 sync-rsync-verify-metamanifest: no localrepo location: /local/tmp/huber/prefix/usr/local/portage masters: gentoo science location: /local/tmp/huber/prefix/var/db/repos/science sync-type: git sync-uri: https://github.com/gentoo-mirror/science.git masters: gentoo ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -O2 -pipe -march=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /local/tmp/huber/prefix/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /local/tmp/huber/prefix/etc/env.d /local/tmp/huber/prefix/etc/gentoo-release" CXXFLAGS="-O2 -pipe -O2 -pipe -march=native" DISTDIR="/local/tmp/huber/prefix/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sfperms strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans unprivileged xattr" FFLAGS="-O2 -pipe -O2 -pipe -march=native" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.utf-8" LC_ALL="en_US.utf-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j3" PKGDIR="/local/tmp/huber/prefix/var/cache/binpkgs" PORTAGE_CONFIGROOT="/local/tmp/huber/prefix/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/dev/shm/" USE="acl amd64 berkdb bzip2 caps cli crypt curl cxx dri fftw fortran gdbm hdf5 iconv ipv6 jpeg lapack latex libtirpc lz4 lzma metis ncurses nls nptl openmp pcre pdf png postscript prefix python readline seccomp sqlite ssl stunnel tcpd threads tiff tools unicode utils vim-syntax webp xattr xkb zlib zstd" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 f16c fma3 pclmul popcnt sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="BPF X86 WebAssembly" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-1" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6 python3_7" QEMU_USER_TARGETS="x86_64" RUBY_TARGETS="ruby24" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
I had to manually merge packages in reverse order.
*** Bug 687366 has been marked as a duplicate of this bug. ***
(In reply to Attila Tóth from comment #1) > I had to manually merge packages in reverse order. I couldn't because of dependencies. I ended up removing manually the files. This happened for a lot of other texlive packages. I couldn't much more time investigating this issue since latex is one of my main working tool, and I can't afford much of a downtime. Here is my list (in reverse order of merge): dev-texlive/texlive-latexextra-2019: dev-texlive/texlive-mathscience-2017:0::gentoo /usr/share/texmf-dist/scripts/pygmentex/pygmentex.py /usr/share/texmf-dist/tex/latex/pygmentex/pygmentex.sty dev-texlive/texlive-luatex-2017:0::gentoo /usr/share/texmf-dist/scripts/cloze/cloze.lua /usr/share/texmf-dist/tex/lualatex/cloze/cloze.sty /usr/share/texmf-dist/tex/lualatex/lua-check-hyphen/lua-check-hyphen.lua /usr/share/texmf-dist/tex/lualatex/lua-check-hyphen/lua-check-hyphen.sty /usr/share/texmf-dist/tex/lualatex/luatodonotes/inspect.lua /usr/share/texmf-dist/tex/lualatex/luatodonotes/luatodonotes.lua /usr/share/texmf-dist/tex/lualatex/luatodonotes/luatodonotes.sty /usr/share/texmf-dist/tex/lualatex/luatodonotes/path_line.lua /usr/share/texmf-dist/tex/lualatex/luatodonotes/path_point.lua /usr/share/texmf-dist/tex/lualatex/showhyphens/showhyphens.sty dev-texlive/texlive-publishers-2017:0::gentoo /usr/share/texmf-dist/tex/latex/xcookybooky/xcookybooky.cfg /usr/share/texmf-dist/tex/latex/xcookybooky/xcookybooky.sty ===================================================================== dev-texlive/texlive-pstricks-2019: dev-texlive/texlive-latexextra-2017:0::gentoo /usr/share/texmf-dist/scripts/pst-pdf/ps4pdf /usr/share/texmf-dist/scripts/pst-pdf/ps4pdf.bat /usr/share/texmf-dist/scripts/pst-pdf/ps4pdf.bat.noMiKTeX /usr/share/texmf-dist/scripts/pst-pdf/ps4pdf.bat.w95 /usr/share/texmf-dist/tex/latex/pst-pdf/pst-pdf.sty ===================================================================== dev-texlive/texlive-bibtexextra-2019: dev-texlive/texlive-luatex-2017:0::gentoo /usr/share/texmf-dist/tex/lualatex/luabibentry/luabibentry.lua /usr/share/texmf-dist/tex/lualatex/luabibentry/luabibentry.sty ===================================================================== dev-texlive/texlive-latexrecommended-2019: dev-texlive/texlive-latexextra-2017:0::gentoo /usr/share/texmf-dist/tex/latex/etoolbox/etoolbox.def /usr/share/texmf-dist/tex/latex/etoolbox/etoolbox.sty /usr/share/texmf-dist/tex/latex/footnotehyper/footnotehyper.sty dev-texlive/texlive-luatex-2017:0::gentoo /usr/share/texmf-dist/tex/latex/ucharcat/ucharcat.sty Would it be possible add some kind of blockers so that when people update, the old texlive packages are removed first by portage and then the new ones are merged. I vaguely remember such features, although it may not be possible.
So this is not the first time this happens ... see https://wiki.gentoo.org/wiki/TeX_Live#Upgrading Also hard blockers won't solve the issue, see bug #606730 about hard blockers in a previous version of texlive, to address a very similar situation. I would suggest to replace the first instruction in the wiki by qlist -I dev-texlive because of the extend of the file moves. Then the remainder of the instructions should still be relevant. This may need to be tested. Also the message given in app-text/texlive-core is not too useful: the information given in https://wiki.gentoo.org/wiki/Project:TeX/Tex_Live_Migration_Guide is not that current. On the other hand, https://wiki.gentoo.org/wiki/TeX_Live#Upgrading contains a better procedure to update the texlive packages.
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e9be7bef059180a2bf226ada47b2ad1963f5a062 commit e9be7bef059180a2bf226ada47b2ad1963f5a062 Author: Mikle Kolyada <zlogene@gentoo.org> AuthorDate: 2019-06-05 19:27:36 +0000 Commit: Mikle Kolyada <zlogene@gentoo.org> CommitDate: 2019-06-05 19:28:09 +0000 dev-texlive/texlive-latexrecommended: add more blockers to 2019 release Closes: https://bugs.gentoo.org/687334 Signed-off-by: Mikle Kolyada <zlogene@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11 .../texlive-latexrecommended/texlive-latexrecommended-2019.ebuild | 2 ++ 1 file changed, 2 insertions(+)
*** Bug 687470 has been marked as a duplicate of this bug. ***
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